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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000750.1.g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 24725.7 Da PI: 9.8465 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.2e-19 | 99 | 149 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr p + r r +lg+f ta eAa a+++a+++++g FANhyb_rscf00000750.1.g00003.1 99 CNYRGVRQRT-WGKWVAEIRSP---N-RgSRLWLGTFPTAIEAALAYDEAARAMYG 149 56*****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.5E-14 | 99 | 149 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.00E-31 | 99 | 157 | No hit | No description |
PROSITE profile | PS51032 | 22.036 | 100 | 157 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 100 | 158 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-21 | 100 | 157 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-35 | 100 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-10 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-10 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MPAWRVVALT LVWSRGVRLG QVSRCIPAQY NLDFMTNLKK VHTKQDGSSP VAEILAKWKE 60 YNDHLESSND GSKPTRKVPA KGSRKGCMKG KGGPENSRCN YRGVRQRTWG KWVAEIRSPN 120 RGSRLWLGTF PTAIEAALAY DEAARAMYGS AARLNFPKVT FSSSGRATVL APSCVATSAG 180 SESSGTSGHS EDFSPQDKVN SHSPHIVNND VIDLNQMDLN QTEEEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-18 | 100 | 157 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-18 | 100 | 157 | 5 | 63 | ATERF1 |
3gcc_A | 3e-18 | 100 | 157 | 5 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460156.1 | 1e-141 | PREDICTED: putative dehydration-responsive element-binding protein 2H | ||||
Swissprot | Q8LFR2 | 3e-51 | DRE2C_ARATH; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A3S8T902 | 1e-140 | A0A3S8T902_FRAAN; Transcription factor ERF28 | ||||
STRING | XP_004293490.1 | 1e-117 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40350.1 | 2e-43 | ERF family protein |
Publications ? help Back to Top | |||
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