PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000192.1.g00017.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 440aa    MW: 50105.3 Da    PI: 4.7217
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000192.1.g00017.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.34.1e-25121441128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkr 73 
                                     lp Gf+F Ptd+el+ +yL +kv gk+++ ++  + e+++yk+ePwdL +     ++ ++ +++y +++ +k +++g++
  FANhyb_rscf00000192.1.g00017.1  12 LPSGFKFLPTDQELLGYYLLNKVLGKQFKYDSRvMIELNLYKAEPWDLWNrfggpRL-NQGEDLYIYTELKKVSNNGSN 89 
                                     699************************888654499************753455433.356799*************** PP

                             NAM  74 knratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                       r+t sg+Wk   +  ev+++  +++  g  k + +   ++p+ e+ +W+m ey+l
  FANhyb_rscf00000192.1.g00017.1  90 VARTTGSGTWKGDTSGFEVYVSedNKKILGSWKRFHYK-PNEPN-ENGSWIMVEYKL 144
                                     ***********777777777664477778999998886.45555.69********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-316165IPR003441NAC domain
PROSITE profilePS5100532.09212166IPR003441NAC domain
PfamPF023656.5E-1413144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MASSSCVHGF NLPSGFKFLP TDQELLGYYL LNKVLGKQFK YDSRVMIELN LYKAEPWDLW  60
NRFGGPRLNQ GEDLYIYTEL KKVSNNGSNV ARTTGSGTWK GDTSGFEVYV SEDNKKILGS  120
WKRFHYKPNE PNENGSWIMV EYKLDDSLIP KSCKGSDLVL CRIRKDRKRK LIEDQMNDSP  180
QSSRRKVPRV DNQGGMSTHG KHILNDDTNL LASFTQFLGS EEEQKPQQQQ VDSNMRFGEH  240
ELQQQDPQVY VSPSPSHFHE QQQQQQLDGN PLMVSSDHYI LQSAETYEPM DVQPSYFHVQ  300
QQHLPGDDLM GFSHHVKFKR VENYESMSIV NAHHLENPPL QDGVPFDNLF TVDELYNEAS  360
AATLVASEPQ PTNFYCAANG NVLSYNELDD NVFREAYHPE QNNDGYDAIA AAVDESQFDD  420
GSWLADLMDD NNSSGYPAAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-151016515164NO APICAL MERISTEM PROTEIN
1ut4_B7e-151016515164NO APICAL MERISTEM PROTEIN
1ut7_A7e-151016515164NO APICAL MERISTEM PROTEIN
1ut7_B7e-151016515164NO APICAL MERISTEM PROTEIN
4dul_A7e-151016515164NAC domain-containing protein 19
4dul_B7e-151016515164NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163170RKDRKRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459728.10.0PREDICTED: NAC domain-containing protein 7-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-19NAC domain containing protein 36