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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000157.1.g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TCP | ||||||||
Protein Properties | Length: 260aa MW: 28026.9 Da PI: 9.0438 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.6 | 1.2e-39 | 36 | 138 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaessss 80 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a+ s+ FANhyb_rscf00000157.1.g00006.1 36 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGGSV 114 789******************************************************************9984444444 PP TCP 81 sasnsssg...............k 89 s++ + + + FANhyb_rscf00000157.1.g00006.1 115 SQQGVQYQlastglwppagfgfsS 138 444222223445566665555542 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.3E-31 | 41 | 247 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 42 | 96 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSENNNNNNN NVVKPAEIKD FQIVIADKDE TKKQLAPKRS SNKDRHTKVE GRGRRIRMPA 60 LCAARIFQLT RELGHKSDGE TIQWLLQQAE PSIIAATGTG TIPASALAAA GGSVSQQGVQ 120 YQLASTGLWP PAGFGFSSQS SSSGPSTTNL GGTESSSNYL QKIGLPGFDL PVTNMGPMSF 180 TSILGGGSQQ LPGLELGLSQ DGHLGVLNSQ AYQIYQQMGH ARVHHHQQQQ QQQQHQQQQH 240 QHQQQQQAPS SKDDSQGSGQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468196.1 | 1e-125 | PREDICTED: transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 1e-71 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A1Q1NA40 | 1e-124 | A0A1Q1NA40_FRAVE; PCF transcription factor 17 | ||||
STRING | XP_004304531.1 | 1e-124 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 4e-49 | TCP family protein |