PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000117.1.g00007.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 756aa    MW: 82111.1 Da    PI: 6.5652
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000117.1.g00007.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2331.4e-10285341155
                             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  FANhyb_rscf00000117.1.g00007.1 285 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 341
                                     57*******************4444.2455535555.7799999*************98 PP
2AP246.58.8e-15384435155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  FANhyb_rscf00000117.1.g00007.1 384 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 435
                                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.25E-14285351IPR016177DNA-binding domain
PfamPF008473.9E-8285341IPR001471AP2/ERF domain
CDDcd000181.38E-18285351No hitNo description
SMARTSM003805.3E-22286355IPR001471AP2/ERF domain
PROSITE profilePS5103217.016286349IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-11286350IPR001471AP2/ERF domain
PRINTSPR003674.3E-6287298IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17384445IPR016177DNA-binding domain
PfamPF008471.1E-9384435IPR001471AP2/ERF domain
CDDcd000189.07E-25384445No hitNo description
PROSITE profilePS5103219.045385443IPR001471AP2/ERF domain
SMARTSM003801.5E-33385449IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-18385444IPR001471AP2/ERF domain
PRINTSPR003674.3E-6425445IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MNMNWLGFSL SPQEDDNAPI SHQLAEQDTL ASRLGFNSNE IHGAGGGTDV SGGGGGGECF  60
YLTNSGSTAS LNHHLPPSNF GILEAAAFNR NNDHIHSQQD WNMKGAGMNS SDSNNYKRTS  120
SSDLSTMLMG SSTTTSTSCI NSQANLEDHH QQLPKLENFL GRHSFADHDH SSSGHDYMFD  180
MNNGPGPVST EAGEKNSKES RNQPQSSLSL SMSTGSLHTI TTATAGGAAS AATGETTCSS  240
DNTTKQSPVV TATTTTGTDA QTQSTGVAIE AVPRKAIETF GQRTSIYRGV TRHRWTGRYE  300
AHLWDNSCRR EGQTRKGRQG GYDKEDKAAR AYDLAALKYW GTTTTTNFPI SSYEKEIDEM  360
KPMTRQEYVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE  420
EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SILESSALPI TTGATAKRLK EQQQQQPPAD  480
HHHQIMLSRA AVGQLSHSTN PKLKQLLAAP PHQAPYAAGI SGMQLHYSPY GYGYGNAHAQ  540
RVWCKQEQDT NSNQENSFHH PDDDHLRQQL QLGGTHNFFH DHDQQPSGLM GLMDSSSAAS  600
MEHSSGSNSV IYSAGDHHGI NNGYGSSTTG TGSGYIMPMA MSTVVANEDQ NQGDGNNDNM  660
NGFGDGDDHD ANIKAQQLGY DHQNMFHGSS STTDPSYQHH ASNRNLYYHL PAHDDQHESS  720
SVAVATSSTT ATCNMNWVPT AVPTVTHPTF TVWNDA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466082.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT1
SwissprotQ8LSN21e-132BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLX2CT940.0X2CT94_ROSCN; BBM2
STRINGXP_004304826.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-118AP2 family protein