PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00002198_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 230aa MW: 25696.7 Da PI: 8.301 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.3 | 1.3e-20 | 19 | 62 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i n sn qvtfskR +g++KKA+EL++LC++e+a+++fs++ k FANhyb_icon00002198_a.1.g00001.1 19 KIPNRSNLQVTFSKRCAGLFKKASELCTLCGVEIAIVVFSPSHK 62 588*************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.6E-28 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.133 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.13E-32 | 11 | 85 | No hit | No description |
SuperFamily | SSF55455 | 3.01E-25 | 11 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-16 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-24 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-16 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-16 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MEMQIKKPRQ GRQKIAITKI PNRSNLQVTF SKRCAGLFKK ASELCTLCGV EIAIVVFSPS 60 HKPFSFGHPS VKALIGRFFT PSPSSFPITT HQTLYPKKAS VEHELNMQLI ATEGRLEAEK 120 RQGEDLDKMN VEGCNGGAQK NVTEQVSDCW WEKPIEELGL DELQMLKAAM EELKKNVTEQ 180 VHKMNGPAIF SVPFSVMNLD HHLSERKFAE INGCHGSMIP PCAYGHGSFI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305275.1 | 1e-146 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2P6RX98 | 9e-98 | A0A2P6RX98_ROSCH; Putative transcription factor MADS-type1 family | ||||
STRING | XP_004305275.1 | 1e-145 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-45 | AGAMOUS-like 61 |