PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00000348_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

ERF

Protein Properties

Length: 252aa MW: 28267.4 Da PI: 10.0399

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00000348_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.8	4.8e-17	111	160	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +g+W+AeIr+p + +r +lg+f+tae+Aa +++a+ l+g FANhyb_icon00000348_a.1.g00001.1 111 KFLGVRQRP-WGKWAAEIREP-----HsgRRLWLGTFDTAEDAAMVYDKAAVLLRG 160 688****.******7.....337********************98887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.62E-29	111	168	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.8E-28	111	168	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-21	111	168	IPR016177	DNA-binding domain
SMART	SM00380	4.2E-33	111	174	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.549	111	168	IPR001471	AP2/ERF domain
Pfam	PF00847	1.1E-9	112	156	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-9	112	123	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-9	134	150	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MEVHQHTQME AKSIKPRLVR ISVTDGDATE SSSDEEAEPL ATGHRVKKFI NEIMIESSTK 60 TDSGVWRSRT TRMWRKKTGG KSGLPATCRM LKAQTTWKKF CGVKEKAHKN KFLGVRQRPW 120 GKWAAEIREP HSGRRLWLGT FDTAEDAAMV YDKAAVLLRG PDTYTNFRPF VIGGGSVKTS 180 QNHDNDLSTV KYTLCSQMDT VGTGKSTVKD GQVELSIRMK SFSIRAVDYQ GAEFCHELMI 240 NSILVCSPAM FL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-18	112	167	3	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	4e-18	107	175	1	69	ATERF1
3gcc_A	4e-18	107	175	1	69	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004298864.1	1e-117	PREDICTED: uncharacterized protein LOC101302355 isoform X2
Refseq	XP_011463950.1	1e-117	PREDICTED: uncharacterized protein LOC101302355 isoform X2
Refseq	XP_011463951.1	1e-117	PREDICTED: uncharacterized protein LOC101302355 isoform X3
Swissprot	Q9SUE3	1e-36	CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBL	A0A3Q8TD72	1e-116	A0A3Q8TD72_FRAAN; Transcription factor ERF49
STRING	XP_004298864.1	1e-116	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF450	34	161

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	9e-30	cytokinin response factor 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zwack PJ,Compton MA,Adams CI,Rashotte AM Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance. Plant Cell Rep., 2016. 35(3): p. 573-84 [PMID:26650835] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515]