PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

ERF

Protein Properties

Length: 311aa MW: 34006.7 Da PI: 6.0571

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H01085.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60	5.5e-19	67	115	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Eucgr.H01085.1.p 67 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 115 9*****.******954...4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.1E-37	66	129	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.1E-32	66	124	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.775	66	123	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.09E-22	66	124	IPR016177	DNA-binding domain
CDD	cd00018	5.12E-31	67	124	No hit	No description
Pfam	PF00847	6.4E-12	67	115	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.1E-12	67	78	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.1E-12	89	105	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0034059	Biological Process	response to anoxia
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MCGGAIIAEF IPRNRRRVTS SDLWPDSLFL KPSNGLDDPL PPKQHPCPAS GGAQEEKAPK 60 KPRKNLYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDREA RKIRGKKAKV 120 NFPNEDDAFS TIPRAHQTQH HHHPQVPDYP PLYQPNWNNN GAPAKTLDLA FAYDLNQTGH 180 FPANGYAPIH AEPVAMSSEE ISGSGSEDTH ASSTAALLGA NYGAAEAKVK AEGEVGKKKE 240 EDEESEVQKL SEELLAFENY MKFYQIPYLD GQSAAAPPNP AQDSVVGELW AFDDDNDNAS 300 GVTAVAPAAL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-21	67	132	15	81	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H01085.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010069891.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF071
Swissprot	O22259	8e-38	ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBL	A0A059AXD1	0.0	A0A059AXD1_EUCGR; Uncharacterized protein
STRING	XP_010069891.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47520.1	3e-32	ERF family protein

Link Out ? help Back to Top
Phytozome	Eucgr.H01085.1.p
Entrez Gene	104456734

Publications ? help Back to Top
Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474] Eysholdt-Derzsó E,Sauter M Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling. Plant Physiol., 2017. 175(1): p. 412-423 [PMID:28698356] Eysholdt-Derzsó E,Sauter M Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis. Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108 [PMID:29996004]