PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G02349.1.p | ||||||||
Common Name | EUGRSUZ_G02349, LOC104453819 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 430aa MW: 48297.7 Da PI: 5.244 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.6 | 4.6e-31 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tk 79 lp G++F+P+d+e++++ L+k eg k + ee+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+ Eucgr.G02349.1.p 58 LPTGVKFDPSDSEIMHHLLAKAgFEGLKshpfI--EEFIPTVDeddgICYTHPRNLP-GVKQDGSVAHFFHRAIKAYNTGTRKRRKilgddFG 147 699************666655533333354332..344666645557**********.677888899******************74555545 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +W++tgk+k+v++ +g ++g kk++v+y++ r k+ekt+W mh+y+l Eucgr.G02349.1.p 148 DVRWHKTGKTKPVMV-DGVQKGWKKIMVLYTNlvRGGKSEKTNWKMHQYHL 197 889************.99************6545888899*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.18E-36 | 43 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.805 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-12 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MAGPSWLVDS HRIATKIRSA SGASDPEKVK WKSNPTRACP NCQHVIDNSD VAKQWPGLPT 60 GVKFDPSDSE IMHHLLAKAG FEGLKSHPFI EEFIPTVDED DGICYTHPRN LPGVKQDGSV 120 AHFFHRAIKA YNTGTRKRRK ILGDDFGDVR WHKTGKTKPV MVDGVQKGWK KIMVLYTNLV 180 RGGKSEKTNW KMHQYHLGTE EDEKDGEFVI SKIFYDHQQQ QLDQGEKNEQ NNRERVDATT 240 MKADPVSPKS ATPNPPRTER RSCDSDPVQD SACGGPLAQH VETQCADLDG PLEIENPQHR 300 EQTISAPEMM VDGDQQAEEE SKWWDSESQN LLDSQQLVEG LSLCDEFLQS QSPNRDDINH 360 HVESKKRILL SDYAKLGPED LKKDLEECHN LALDPANIEL DTPPDFRLSQ LEFGSQDSFL 420 AWGGSKVVD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G02349.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010066746.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 1e-178 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A059BGG6 | 0.0 | A0A059BGG6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010066746.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9707 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-180 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G02349.1.p |
Entrez Gene | 104453819 |