PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01052.1.p
Common NameEUGRSUZ_G01052, LOC104452959
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 529aa    MW: 60570.1 Da    PI: 6.4086
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM791e-24241473128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgy.Wkatg 87 
                       +G+ F+Pt+eel+ +yLk  v g + ++  +i+++ ++y+++PwdLp+       v ++++ew+f ++++++    +r++r+t  g+ W+ tg
  Eucgr.G01052.1.p  24 AGYGFRPTEEELI-NYLKSAVPGWRESF-CIIPTLeNVYRIDPWDLPAkfnensIVPSSDQEWWFICPQAQN----QRNSRKTPCGFsWNITG 110
                       799**********.9**********888.66887779**********63555544444899*******8775....689999999988***** PP

               NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k +++++k +  ++g k++Lvf      +g+ t+Wv+hey+l
  Eucgr.G01052.1.p 111 KPRDITAKnDVDKIGYKRMLVFQ-----DGVPTNWVIHEYHL 147
                       ******9855667*********8.....7899********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-2721163IPR003441NAC domain
PROSITE profilePS5100528.59922164IPR003441NAC domain
PfamPF023651.4E-1424147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
METRIHPMNF EVKEIALLLQ QKVAGYGFRP TEEELINYLK SAVPGWRESF CIIPTLENVY  60
RIDPWDLPAK FNENSIVPSS DQEWWFICPQ AQNQRNSRKT PCGFSWNITG KPRDITAKND  120
VDKIGYKRML VFQDGVPTNW VIHEYHLPDH HFNSNYVLCH LKRRRNEEAD NLAYLESYLH  180
QPDHEDSFAE YLIQETMNSL IENESPPVMD FTLDNGLYDE YIQLASETSE EDEDVDYMLN  240
RDFVDVGFFD GDAMETQSLQ HGQGSNLHNE SPALMRNRRT RTIDSLHGVV PLEEKKGMVE  300
NKFNGSLIAP EKPTAPPVHA ASAKYRGKDE VPQFEKAKQE TGAKRIKPEY TYWDEREARA  360
KNGQISIMEN RQTRTNGSVY GAVPLEQKKG VIQSKFNRSH VSSAKPTELP EKPKTPKISE  420
PSRFYINEGM RREGVKKQEI ALSNIKTECV SWDEAVATAK VLKYREHCSS SNSPRKKTSR  480
ETEQAREKAN SVTARTRPTT TNPPQPNPLN VIVGIILLFA LIYDFVIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01052.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065761.10.0PREDICTED: uncharacterized protein LOC104452959 isoform X1
TrEMBLA0A059BC200.0A0A059BC20_EUCGR; Uncharacterized protein
STRINGXP_010065761.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2778723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.19e-24NAC domain containing protein 71