PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00031.1.p
Common NameEUGRSUZ_F00031, LOC104447761
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 240aa    MW: 25313.6 Da    PI: 6.7873
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.4e-183479147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W++eEd+ l ++v ++G+++W++I+r+++ gR++k+c++rw + 
  Eucgr.F00031.1.p 34 KGPWSAEEDQVLTRLVGRYGPRNWSLISRHIQ-GRSGKSCRLRWCNQ 79
                      79******************************.***********985 PP
2Myb_DNA-binding574.4e-1888130347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++++Ede ++ a++++G++ W+tIar+++ gRt++ +k++w++ 
  Eucgr.F00031.1.p  88 PFSADEDEAILAAHARYGNR-WATIARMLP-GRTDNAVKNHWNST 130
                       79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.1212984IPR017930Myb domain
SuperFamilySSF466891.91E-3131127IPR009057Homeodomain-like
SMARTSM007171.3E-153382IPR001005SANT/Myb domain
PfamPF002493.5E-173479IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-243587IPR009057Homeodomain-like
CDDcd001671.44E-133678No hitNo description
SMARTSM007173.0E-1685133IPR001005SANT/Myb domain
PROSITE profilePS5129421.04686135IPR017930Myb domain
PfamPF002495.6E-1588130IPR001005SANT/Myb domain
CDDcd001673.36E-1288131No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2288135IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEGFNAGSSS TCSSSDSDSS LSNNAAAARP DRIKGPWSAE EDQVLTRLVG RYGPRNWSLI  60
SRHIQGRSGK SCRLRWCNQL SPAVEHRPFS ADEDEAILAA HARYGNRWAT IARMLPGRTD  120
NAVKNHWNST LKRRLREGQA ERHSSGGGSG GGGGGSSSPG AGSGWWCAGN GEDEDPMTAL  180
TLGPPGGGGD AAAEGRRGEG LPQPEGQFWD VMKDVIAKEV REYMSSALAE SGETGSAFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-433013554159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-433013554159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00031.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059771.21e-173PREDICTED: transcription factor MYB44
TrEMBLA0A059BJ061e-172A0A059BJ06_EUCGR; Uncharacterized protein
STRINGXP_010059771.11e-173(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145531122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.14e-57myb domain protein r1