PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00098.1.p
Common NameEUGRSUZ_E00098, LOC104443404
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 359aa    MW: 38126.6 Da    PI: 5.2278
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00098.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-30173231259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+ eHnh+
  Eucgr.E00098.1.p 173 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPGMFVVTYTAEHNHP 231
                       79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-30164233IPR003657WRKY domain
PROSITE profilePS5081134.75167233IPR003657WRKY domain
SuperFamilySSF1182907.19E-26169233IPR003657WRKY domain
SMARTSM007742.2E-36172232IPR003657WRKY domain
PfamPF031064.2E-25174231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEEDWDLHAV VRSFTASSSS SSSSSAAASA TATATAGTTW TDLALHAPVP CSSFGAVKID  60
EGFVSPPDPY EARHSSLAEL HELYQHELGK PFFPKSEPLV FQSAAVSALP SFGGVNGQPA  120
FRQQPNPANN NGSAPASSSS SCMTSSQSQA SRKRSRKNQL KKVCHVPAES LSSDIWAWRK  180
YGQKPIKGSP YPRGYYRCSS SKGCLARKQV ERNRSDPGMF VVTYTAEHNH PAPTHRNSLA  240
GSTRQKPVMP QTDTVEDPSA AASTKPPCSS PTTSLEEEVA KTQSTNTESR EDKEGSMADD  300
EEDGDAGLSD MAMSDDFFVG LEGLKGGGDD DDCFLDPFPA NFGHSWAANN TATATGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-22157234280Disease resistance protein RRS1
5w3x_D1e-22157234280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00098.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055078.10.0PREDICTED: WRKY transcription factor 22 isoform X1
TrEMBLA0A059C0310.0A0A059C031_EUCGR; Uncharacterized protein
STRINGXP_010055078.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78102741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-58WRKY family protein