PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.D00184.7.p

Common Name

EUGRSUZ_D00184

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HD-ZIP

Protein Properties

Length: 607aa MW: 66800.2 Da PI: 6.7727

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.D00184.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.9e-19	18	76	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Eucgr.D00184.7.p 18 KYVRYTPEQVEALERVYNECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 76 6789*****************************************************97 PP
2	START	172.7	2.3e-54	167	374	2	204
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +a e+++++++ka+ ++ Wv++ +++g++++ +++ s++++g a+r++g+v +++ v+e+l+d++ W ++++ e+l+vi g g+++ Eucgr.D00184.7.p 167 IAAETLTQFLAKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARVCGLVSLEPM-KVAEILKDRPSWFRDCRCLEVLNVIPAGngGTIE 258 578999**************************************************.8888888888*************999 PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l +++++a+++l++ Rdf++vRy+ +l++g++vi+++S++ + p+ sss+vRae+lpSg+li+p+++g+ +++v+hvdl++++++++l Eucgr.D00184.7.p 259 LVYMQTYAPTTLAAaRDFWTVRYTTTLEDGSLVICERSLTTSTGGPSgpsSSSFVRAEVLPSGYLIRPCEGGGAIIHIVDHVDLDAWSVPEVL 351 ***************************************9999999*************************************** PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s+ + ++k++va+l++ + Eucgr.D00184.7.p 352 RPLYESSKILAQKMTVAALRHIR 374 *****************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.661	13	77	IPR001356	Homeobox domain
SMART	SM00389	6.0E-15	15	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.45E-16	18	80	IPR009057	Homeodomain-like
Pfam	PF00046	1.6E-16	18	76	IPR001356	Homeobox domain
CDD	cd00086	5.84E-17	18	78	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.2E-19	20	76	IPR009057	Homeodomain-like
PROSITE profile	PS50848	25.339	157	385	IPR002913	START domain
SMART	SM00234	9.2E-49	166	376	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	3.4E-22	166	371	IPR023393	START-like domain
SuperFamily	SSF55961	3.43E-37	167	378	No hit	No description
Pfam	PF01852	7.7E-52	167	374	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009855	Biological Process	determination of bilateral symmetry
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0080060	Biological Process	integument development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence Send to blast
MALAMHRECS SKQMDASKYV RYTPEQVEAL ERVYNECPKP SSLRRQQLIR ECPILCNIEP 60 KQIKVWFQNR RCREKQRKEA YRLQTVNRKL NAMNKLLMEE NDRLQKQVSQ LVYENGYMRQ 120 QLHSASTATT DNSCESVVMS GQHQQQHNPT PQHPEKDASS PAGLLAIAAE TLTQFLAKAT 180 GTAVDWVQMI GMKPGPDSIG IVAVSRNCNG VAARVCGLVS LEPMKVAEIL KDRPSWFRDC 240 RCLEVLNVIP AGNGGTIELV YMQTYAPTTL AAARDFWTVR YTTTLEDGSL VICERSLTTS 300 TGGPSGPSSS SFVRAEVLPS GYLIRPCEGG GAIIHIVDHV DLDAWSVPEV LRPLYESSKI 360 LAQKMTVAAL RHIRQIAQES SGEIQYGGSR QPAVLRTFSQ KLCRGFNDAV NGFVDDGWSV 420 LSSDGVEDVT IAVNSSPNKF LGSQYNATIF PNFGRGVLCA KASMLLQNVP PAVLVRFLRE 480 HRSEWADHGI DAYSAASLKT SSYAIPCVRP GGFPSSHVIL PLAHTVEQEE FLEVVRLEGH 540 AFSPEDIPLA HDMYLLQLCS GVDENAVGAC AQLVFAPIDE SFADDAPLLP SGFRVIQLDP 600 KTVKHP*

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence Send to blast

MALAMHRECS SKQMDASKYV RYTPEQVEAL ERVYNECPKP SSLRRQQLIR ECPILCNIEP  60
KQIKVWFQNR RCREKQRKEA YRLQTVNRKL NAMNKLLMEE NDRLQKQVSQ LVYENGYMRQ  120
QLHSASTATT DNSCESVVMS GQHQQQHNPT PQHPEKDASS PAGLLAIAAE TLTQFLAKAT  180
GTAVDWVQMI GMKPGPDSIG IVAVSRNCNG VAARVCGLVS LEPMKVAEIL KDRPSWFRDC  240
RCLEVLNVIP AGNGGTIELV YMQTYAPTTL AAARDFWTVR YTTTLEDGSL VICERSLTTS  300
TGGPSGPSSS SFVRAEVLPS GYLIRPCEGG GAIIHIVDHV DLDAWSVPEV LRPLYESSKI  360
LAQKMTVAAL RHIRQIAQES SGEIQYGGSR QPAVLRTFSQ KLCRGFNDAV NGFVDDGWSV  420
LSSDGVEDVT IAVNSSPNKF LGSQYNATIF PNFGRGVLCA KASMLLQNVP PAVLVRFLRE  480
HRSEWADHGI DAYSAASLKT SSYAIPCVRP GGFPSSHVIL PLAHTVEQEE FLEVVRLEGH  540
AFSPEDIPLA HDMYLLQLCS GVDENAVGAC AQLVFAPIDE SFADDAPLLP SGFRVIQLDP  600
KTVKHP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269\|PubMed:11395776, ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:17900520, ECO:0000269\|PubMed:9747806}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.D00184.7.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:14999284, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010051960.1	0.0	PREDICTED: homeobox-leucine zipper protein HOX32 isoform X2
Swissprot	O04292	0.0	ATBH9_ARATH; Homeobox-leucine zipper protein ATHB-9
TrEMBL	A0A059CC05	0.0	A0A059CC05_EUCGR; Uncharacterized protein
STRING	XP_010051959.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Eucgr.D00184.7.p

Publications ? help Back to Top
Jia X, et al. Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Wójcik AM,Nodine MD,Gaj MD miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785]