PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03830.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 258aa    MW: 28187.7 Da    PI: 6.8702
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03830.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.66.8e-23951143
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      krien++ rqvtfsk rng+lKKA+ELSvLC+aeva+iif++ 
  Eucgr.C03830.1.p  9 KRIENDTSRQVTFSKGRNGLLKKAFELSVLCNAEVALIIFGQA 51
                      79**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-27160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-21151IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.357161IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-22323IPR002100Transcription factor, MADS-box
PfamPF003195.8E-201051IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVRGKTHMKR IENDTSRQVT FSKGRNGLLK KAFELSVLCN AEVALIIFGQ ALRVLELDET  60
VGFPPHFCSS SLVTHRLCSA PEAPTPLLLG PPLLHRRCNQ TPEATIPAAT LLLAVSDDPT  120
PAVARPDAVA PKTSDRRLCW AIEAPTPLLL GPPLLPDAPA SACCFILGCE CWSENGYDGX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXNQDAPRQR IIDWINATNG  240
TAGAFDVTTK GIPITDR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03830.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0866425e-60AF086642.1 Eucalyptus globulus subsp. globulus putative MADS box transcription factor ETL mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018725692.13e-29PREDICTED: uncharacterized protein LOC104437135
TrEMBLA0A059CW721e-126A0A059CW72_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010051590.11e-120(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.18e-24AGAMOUS-like 14