PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03457.1.p
Common NameEUGRSUZ_C03457, LOC104438095
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 350aa    MW: 40620.7 Da    PI: 5.962
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03457.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.3e-36121042103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+ye+++d+ ++ ++sw  + +sfvv+de+ef+k+vLp+yFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F+kgkk+ll
  Eucgr.C03457.1.p  12 FLRKTYEMVSDPGTDPVVSWGLRRDSFVVWDEQEFSKEVLPRYFKHSNFSSFIRQLNTYGFRKIDPDR---------WEFANRGFHKGKKHLL 95 
                       9********************999*****************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++ikr++++
  Eucgr.C03457.1.p  96 KNIKRRRRS 104
                       *****9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-388101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.98E-358101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-568101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-171235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.6E-3212101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-175062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEGLGEAGPT PFLRKTYEMV SDPGTDPVVS WGLRRDSFVV WDEQEFSKEV LPRYFKHSNF  60
SSFIRQLNTY GFRKIDPDRW EFANRGFHKG KKHLLKNIKR RRRSNEHRET SSSTVTSDYQ  120
KAENEVELKT LKKDQEALKT RILKLREERE NFQHEIEHVT ERVRHAECRN QQIFLFLTKA  180
AKRPNFVQHL IQKKRQKRDL ETCESSEKSK LLGPDAEATK CLNESMDHMI QSPNVDCLRI  240
SDDLAQMEHW PNRVMPEDFD TIQMPNPWPS MDVEDFRVSL GQTPDQMARA GPSDLSSVFH  300
EMSEKLLRED VVAGDDADNI EVEDHLTVND MGIYLELEGL IDGLGTRGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-25310117129Heat shock factor protein 1
5d5v_B4e-25310117129Heat shock factor protein 1
5d5v_D4e-25310117129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100LKNIKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03457.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049475.20.0PREDICTED: heat shock factor protein HSF30, partial
TrEMBLA0A059CVV60.0A0A059CVV6_EUCGR; Uncharacterized protein
STRINGXP_010049470.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-69heat shock transcription factor A2