PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B02331.1.p

Common Name

EUGRSUZ_B02331

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 656aa MW: 74875.5 Da PI: 7.1552

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B02331.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	360.2	2.9e-110	279	652	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL+ cA+avs+ d++ a++lL ++++ +sp+gd+ qR+a+yf+ +L+arla+ + + ++a++ s ++++ ++++ a++l + ++P+ +f Eucgr.B02331.1.p 279 LRSLLTLCAQAVSTYDFKTARELLRQIRQDSSPTGDASQRIAHYFADGLEARLAG-SIGRSQAFHYSVIEKRSLADKVRAYQLHYSTCPFTRF 370 6899*************************************************.55556678888888889**************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 + l N +Il+++e+++ +Hi+Df+i+ G+QWp L+q+L++R++g +lRiTg++ p+sg +e++e tg+rLak+++++++pfef+++++ Eucgr.B02331.1.p 371 QILFSNYMILKSAETAKVLHIVDFGINFGFQWPILIQELSKRTGGVTKLRITGIELPQSGfrPAERIEGTGHRLAKYCKRFHIPFEFQAVASA 463 *******************************************************9*************************9999 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e++++ +L++++gE++aVn+ + ++l+de+v+++ +rd vL+l+ks++P+v+v+ ++ ++n++ F +rf eal + s+++d++++++ r Eucgr.B02331.1.p 464 SWECIRVADLKIQKGEVVAVNCLSRFEYLYDETVEVNCQRDMVLSLIKSMKPHVFVHGIRNGSYNAPFFITRFREALFHLSTMYDMFNTTVDR 556 ***************************************************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 ++ +r ++Er ++grei+n+vaceg er+er et+++W+ rl+++GF+++pl++k k+a++ l+ + + ++++ee+++++l W++r + + Eucgr.B02331.1.p 557 ANAQRLVLERDFFGREIMNIVACEGLERVERPETYKQWQVRLNRVGFQQLPLDQKLIKKARAKLSGDYHKDFMLDEENNWILLSWRGRIISGC 649 *************************************************************999888****************** PP GRAS 371 SaW 373 ++W Eucgr.B02331.1.p 650 TCW 652 * PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.298	253	633	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-107	279	652	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MEEQPWVIPN IVALRHTEKS LYDALGKKYP DSPEQTEQVD TNLVINSSSW SPWGSSGGQG 60 SNGTTSTSSN SFHPLDLDTH DDLEGNDYVF IHAKSPGDVV LQSNADGKFQ SPINYVNYLP 120 KYGDKFYYSV PSELLIGHIF NNNESVLQFN RGLEEARKFI PSSIYINQEK EGLAPTIREK 180 EEIGINGTNQ SENESRGRKN HERHYAIFEE GRATKQLASD NEDYELSDLL EKLLLSNKNG 240 GLLSLECKSE KSIETKDLHG PNGTWDHSKK KEYESRSDLR SLLTLCAQAV STYDFKTARE 300 LLRQIRQDSS PTGDASQRIA HYFADGLEAR LAGSIGRSQA FHYSVIEKRS LADKVRAYQL 360 HYSTCPFTRF QILFSNYMIL KSAETAKVLH IVDFGINFGF QWPILIQELS KRTGGVTKLR 420 ITGIELPQSG FRPAERIEGT GHRLAKYCKR FHIPFEFQAV ASASWECIRV ADLKIQKGEV 480 VAVNCLSRFE YLYDETVEVN CQRDMVLSLI KSMKPHVFVH GIRNGSYNAP FFITRFREAL 540 FHLSTMYDMF NTTVDRANAQ RLVLERDFFG REIMNIVACE GLERVERPET YKQWQVRLNR 600 VGFQQLPLDQ KLIKKARAKL SGDYHKDFML DEENNWILLS WRGRIISGCT CWVSP*

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MEEQPWVIPN IVALRHTEKS LYDALGKKYP DSPEQTEQVD TNLVINSSSW SPWGSSGGQG  60
SNGTTSTSSN SFHPLDLDTH DDLEGNDYVF IHAKSPGDVV LQSNADGKFQ SPINYVNYLP  120
KYGDKFYYSV PSELLIGHIF NNNESVLQFN RGLEEARKFI PSSIYINQEK EGLAPTIREK  180
EEIGINGTNQ SENESRGRKN HERHYAIFEE GRATKQLASD NEDYELSDLL EKLLLSNKNG  240
GLLSLECKSE KSIETKDLHG PNGTWDHSKK KEYESRSDLR SLLTLCAQAV STYDFKTARE  300
LLRQIRQDSS PTGDASQRIA HYFADGLEAR LAGSIGRSQA FHYSVIEKRS LADKVRAYQL  360
HYSTCPFTRF QILFSNYMIL KSAETAKVLH IVDFGINFGF QWPILIQELS KRTGGVTKLR  420
ITGIELPQSG FRPAERIEGT GHRLAKYCKR FHIPFEFQAV ASASWECIRV ADLKIQKGEV  480
VAVNCLSRFE YLYDETVEVN CQRDMVLSLI KSMKPHVFVH GIRNGSYNAP FFITRFREAL  540
FHLSTMYDMF NTTVDRANAQ RLVLERDFFG REIMNIVACE GLERVERPET YKQWQVRLNR  600
VGFQQLPLDQ KLIKKARAKL SGDYHKDFML DEENNWILLS WRGRIISGCT CWVSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-43	279	652	5	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B02331.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043523.2	0.0	PREDICTED: scarecrow-like protein 34 isoform X2
TrEMBL	A0A059D4Y1	0.0	A0A059D4Y1_EUCGR; Uncharacterized protein
STRING	XP_010043523.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM34273	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	1e-165	GRAS family protein

Link Out ? help Back to Top
Phytozome	Eucgr.B02331.1.p