PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.B01369.1.p | ||||||||
Common Name | EUGRSUZ_B01369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 183aa MW: 19966.5 Da PI: 4.4681 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49 | 7.8e-16 | 12 | 54 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i + r vt+skRr+g++ KA+ L+ LC+a++av++fs+ gk Eucgr.B01369.1.p 12 IADPAARLVTYSKRRKGLFNKASQLCRLCGARAAVLVFSPAGK 54 7777889*********************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-20 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.74 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-12 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-21 | 4 | 76 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-19 | 11 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-12 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-12 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MGKRRRTEIS KIADPAARLV TYSKRRKGLF NKASQLCRLC GARAAVLVFS PAGKPCSFGE 60 PSADEIIGDY LRHGDCDGDV TPPMGLTQWG DWMETEWEAC ATEEDLEALI LKYEAIRDCA 120 RRRLKSLEEA SRVEVGGGES RILSEEEIDA LFESLGRCPA LSDLLTDGDG DGLLSPPENS 180 ADG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.B01369.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010046031.1 | 1e-124 | PREDICTED: protein MADS AFFECTING FLOWERING 5-like | ||||
TrEMBL | A0A059D1D1 | 1e-129 | A0A059D1D1_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010046031.1 | 1e-123 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM34995 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 6e-20 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.B01369.1.p |