PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00189.1.p
Common NameEUGRSUZ_A00189, LOC104440295
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARR-B
Protein Properties Length: 669aa    MW: 72504.4 Da    PI: 6.1719
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00189.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.86e-29204257155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Eucgr.A00189.1.p 204 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 257
                       79*******************.********************************8 PP
2Response_reg77.64.5e-26261341109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+p+ +++l+++l+  +y +v++++ ++ al +l++++  +D++l D+ mp+mdG++ll++i  e  +lp+i+++a + ++ + + + 
  Eucgr.A00189.1.p  26 VLVVDDDPTCLRILEKMLKTCQY-QVTTCSRSDVALSTLRDNKngFDIVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKQVVMKGVT 116
                       89*********************.***************888889**********************6654.8******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+ +e+l +
  Eucgr.A00189.1.p 117 HGACDYLIKPIRIEALKN 134
                       **************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.8E-1766660IPR017053Response regulator B-type, plant
SuperFamilySSF521724.84E-3523147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.2E-4223177No hitNo description
SMARTSM004483.9E-2924136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.54925140IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-2326134IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.05E-2627139No hitNo description
PROSITE profilePS5129410.732201260IPR017930Myb domain
SuperFamilySSF466894.3E-20201261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-30203262IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-25204257IPR006447Myb domain, plants
PfamPF002496.1E-8206256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MSTLTSSCSW KAGDGVSDQF PAGLRVLVVD DDPTCLRILE KMLKTCQYQV TTCSRSDVAL  60
STLRDNKNGF DIVLSDVHMP DMDGFKLLEH IGLEMDLPVI MMSADDGKQV VMKGVTHGAC  120
DYLIKPIRIE ALKNIWQHVV RKRKNEWKEL EQCGSVEDGD RPQKHLEDVD YSSTANEGSW  180
KSGKRRKEEE DDAEERDDSS TLKKPRVVWS VELHQQFVSA VNQLGIDKAV PKKILELMNV  240
PGLTRENVAS HLQKYRLYLR RLSGVPQHQA GVNSSFIGTQ DAGFGAISSL NGYEIQALAA  300
TGQLAPQSLA TLQAAGLGRS AGKSGISIPM LDQRNLFSFD NPKLRFGEGQ SQQNLGTNSK  360
QANLLHGIPT TMEPKQLVNL QQSAQSFGSM SMPVHTHGAQ SSSLLMPMGQ PQARRHVISE  420
SGSSRPPVLQ ANMGQSIMST GLVGQALGRS GTAENGRGLG HNTILQTSSA MNFPMNQVSD  480
APVSSFPIQS TFPTSKGGYP EDVNSSIIKG PGGGMPSYDI LHDLQQIRSN DWEFQNVGVT  540
FDTSQPGNSV QGNIDTSGLL LVHQGLSSGQ SSNGHNRNIS AAGKSLLSAD GNRQVTTPNV  600
GQPPTSLVDN PVQIKTEGFP DMSYQAVLYP EHYSQEDIMS AFLKQQQGIG PPDSEFEFDG  660
FSVNNIPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22203263464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00189.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051575.10.0PREDICTED: two-component response regulator ARR2
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A059DB250.0A0A059DB25_EUCGR; Two-component response regulator
STRINGXP_010051575.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24032773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]