PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS601285.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 166aa MW: 18354.8 Da PI: 4.7245 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.2 | 3.3e-16 | 11 | 54 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i n r vt+skRr+g++ KA+ L+ LC+a++av++fs+ g+ EcS601285.10 11 KIVNPAARLVTYSKRRKGLFNKASQLCRLCGARAAVVVFSPAGE 54 5778889**********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.39 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-19 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-21 | 4 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-12 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-19 | 11 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-12 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-12 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MGKRRRTEIS KIVNPAARLV TYSKRRKGLF NKASQLCRLC GARAAVVVFS PAGEPCSFGE 60 PSADEIIGDY LRHGDCDGDA TPPMGLTQWG DWMETEWEAC ATEEDLEALI LKYEAIRDCA 120 RRRLKSLEEA SRVEVGGGES RILSEEEIDA LFESLGRCPA LSDLLT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010046031.1 | 1e-110 | PREDICTED: protein MADS AFFECTING FLOWERING 5-like | ||||
TrEMBL | A0A059D1D1 | 1e-113 | A0A059D1D1_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010046031.1 | 1e-110 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM34995 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-19 | AGAMOUS-like 61 |