PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055204.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 409aa    MW: 46851.9 Da    PI: 5.9105
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055204.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.9e-36721642103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+ ++ l+sw  + +sfvv+de+ef+k+vLp+yFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F+kgkk+ll++ik
  EcC055204.60  72 FLRKTYEMVSDPGTDPLVSWGLRRDSFVVWDEQEFSKQVLPRYFKHSNFSSFIRQLNTYGFRKIDPDR---------WEFANQGFHKGKKHLLKNIK 159
                   9********************999*****************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++++
  EcC055204.60 160 RRRKS 164
                   *9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-3468161IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.1E-3868161IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-5668161IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.7E-3272161IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-177295IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-17110122IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340111135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-17123135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0015074Biological ProcessDNA integration
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
SCLHSCLTRP EPCSALAVKA AKIKEEVEEE EVPTIADPRD ATILLPSCSW QAVADGVAKP  60
MEGLGEAGPT PFLRKTYEMV SDPGTDPLVS WGLRRDSFVV WDEQEFSKQV LPRYFKHSNF  120
SSFIRQLNTY GFRKIDPDRW EFANQGFHKG KKHLLKNIKR RRKSSEHRET SSSTVTSDYQ  180
KAENEVEFKT LKKDQGALKT KILKLREERE NFQHEIEQVT ERVHHAECRN QQIFLFLTKA  240
AKRPNFVQHL IQKKRQKRDL ETCESSKKSK LLGPDAEATK CLNEVMDHMI QSPNVDCLRI  300
SDDLAQIEHW PNRVMPEDFD TIQMHNPWPS MDVEDFRVSL GQTPDQMARA SPSDLSSVFH  360
EISEKLLRED VVIGDDADNI EVEDHLTVND MGINLELEGL IDGLGTRGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-246316117129Heat shock factor protein 1
5d5v_B1e-246316117129Heat shock factor protein 1
5d5v_D1e-246316117129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160LKNIKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049471.10.0PREDICTED: heat stress transcription factor A-9
RefseqXP_010049472.10.0PREDICTED: heat stress transcription factor A-9
TrEMBLA0A059CUN20.0A0A059CUN2_EUCGR; Uncharacterized protein
STRINGXP_010049471.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.17e-73heat shock transcription factor A2