PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055204.150
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 310aa    MW: 35507.2 Da    PI: 8.6713
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055204.150genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.2e-34251162102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+yei++d+ ++ ++sws++ +sfvv+d++ f+k++Lp+yFkhsnf SFvRQLn+YgF+k+++++         weF+++ F++gkk+ll++i
  EcC055204.150  25 FLRKMYEIVSDPITDPVVSWSSSRDSFVVWDPHGFSKQLLPRYFKHSNFCSFVRQLNTYGFRKMDTDR---------WEFANQGFQEGKKHLLKNI 111
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+++
  EcC055204.150 112 RRRRK 116
                    **976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.0E-5421114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.2E-3621114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-3221114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-172548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3025114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-177688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0015074Biological ProcessDNA integration
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
CSSRAAADEV ARPMQGLGEV GPAPFLRKMY EIVSDPITDP VVSWSSSRDS FVVWDPHGFS  60
KQLLPRYFKH SNFCSFVRQL NTYGFRKMDT DRWEFANQGF QEGKKHLLKN IRRRRKLSEH  120
TKTSNSTVAS DYPEAGKEAE LEMLKKDQEA LKSEILKLRE EREHSQHVIN QVAERVRYAE  180
CRCRRMFLLL SKATESSNFV HLIQERRQKR ELEACESRKK SKLQSPDSEV TKCLLEVMDH  240
KIQNPNVDCP RVGDDPAQME SRPNNVAPVD FQTVQMHNPW PPPMGGGDFR AVQGQTPDRM  300
AGASSSDLPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-231611417129Heat shock factor protein 1
5d5v_B1e-231611417129Heat shock factor protein 1
5d5v_D1e-231611417129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049469.10.0PREDICTED: heat stress transcription factor A-2
TrEMBLA0A059CVV20.0A0A059CVV2_EUCGR; Uncharacterized protein
STRINGXP_010049469.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-69heat shock transcription factor A2