PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055204.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 523aa    MW: 58399.7 Da    PI: 5.3027
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055204.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-341862762101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+ ++ ++sw  +++sf+v+d++ef+k+vLp yFkhsnf SFvRQLn+YgF+k++ ++         weF+++sF+kgkk+ll++ik
  EcC055204.10 186 FLRKTYEMVSDPGTDPVVSWGLSQDSFLVWDQQEFSKQVLPLYFKHSNFFSFVRQLNTYGFRKINPDR---------WEFANQSFQKGKKHLLKNIK 273
                   9********************888*****************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r +
  EcC055204.10 274 RGH 276
                   976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-36182274IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.89E-33182274IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-51182275IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-30186274IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-16186209IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-16224236IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-16237249IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0015074Biological ProcessDNA integration
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MTAFYGGAGG CSAGRTNGSC PWFSKTFFRD SSLELEKAKP FARSLEEIAS FAVLDGGDHG  60
DIGSWSPLYP DLTRTDSSRS QSKALAGELG CCGSLSHSGP LPQAAIGDGK IEAGSHMHSC  120
LTRPELCSAL AVQAEKIKEE LKEEEVATIA DPRDAAILSP SCSWQAAAYD VAKPMEDLRE  180
VGPTPFLRKT YEMVSDPGTD PVVSWGLSQD SFLVWDQQEF SKQVLPLYFK HSNFFSFVRQ  240
LNTYGFRKIN PDRWEFANQS FQKGKKHLLK NIKRGHNLNK HRKKSSSTVT SDYQKAEKEA  300
ELELLKKDQE ALKTKILKLT EEQDNLQHEI EQVAERTHHA DRRNQHLFLL LTKAAKSPNF  360
ILHLIPKKRQ KKDLETCESS KKRELPGPDA EATKCLLEEM DHMIQSPKVD CLRISDDLAQ  420
TECRPNSVVP EDFGTFQMHN PWPSMDDEDF WVAQGQTPNQ MTGASSSDLS AVLHGISEKL  480
LKEDVVIGAD ADNIEVEDHL TLNDTEIYLE LESLIDGMGT QVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-2318627429128Heat shock factor protein 1
5d5v_B8e-2318627429128Heat shock factor protein 1
5d5v_D8e-2318627429128Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049467.10.0PREDICTED: heat stress transcription factor A-2
TrEMBLA0A059CV300.0A0A059CV30_EUCGR; Uncharacterized protein
STRINGXP_010049467.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-55heat shock transcription factor A2