PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054802.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 355aa    MW: 37978.4 Da    PI: 5.227
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054802.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-30170228259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+ eHnh+
  EcC054802.40 170 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPGMFVVTYTAEHNHP 228
                   79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-30161230IPR003657WRKY domain
PROSITE profilePS5081134.75164230IPR003657WRKY domain
SuperFamilySSF1182907.19E-26166230IPR003657WRKY domain
SMARTSM007742.2E-36169229IPR003657WRKY domain
PfamPF031064.2E-25171228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006032Biological Processchitin catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0006887Biological Processexocytosis
GO:0007020Biological Processmicrotubule nucleation
GO:0031122Biological Processcytoplasmic microtubule organization
GO:0048278Biological Processvesicle docking
GO:0000930Cellular Componentgamma-tubulin complex
GO:0005840Cellular Componentribosome
GO:0032040Cellular Componentsmall-subunit processome
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0003924Molecular FunctionGTPase activity
GO:0004568Molecular Functionchitinase activity
GO:0005515Molecular Functionprotein binding
GO:0016853Molecular Functionisomerase activity
GO:0030246Molecular Functioncarbohydrate binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEEDWDLHAV VRSFTASSSS SSAAASGTAT ATAGTTWTDL ALHAPVPCSS FGAVKIDEGF  60
VSPPDPYEAR HSSLAELHEL YQHELGKPFF PKSEPLVFQS AAVSALPSFG GVNGQPAFRQ  120
QPNPANNNGS APASSSSSCM TSSQSQASRK RSRKNQLKKV CHVPAESLSS DIWAWRKYGQ  180
KPIKGSPYPR GYYRCSSSKG CLARKQVERN RSDPGMFVVT YTAEHNHPAP THRNSLAGST  240
RQKPVMPHTD TVEDPSAAAS TKPPYSSPTT SLEEEVAKTQ STNTESREDK EGSMADDEED  300
GDAGLSDMAM SDDFFVGLEG LKGDGDDDDC FLDPFPANFG HSWAANNTAT ATGDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-22154231280Disease resistance protein RRS1
5w3x_D1e-22154231280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055078.10.0PREDICTED: WRKY transcription factor 22 isoform X1
TrEMBLA0A059C0310.0A0A059C031_EUCGR; Uncharacterized protein
STRINGXP_010055078.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-60WRKY family protein