PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

EcC054300.40

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 345aa MW: 38571.9 Da PI: 6.2623

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054300.40	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	263	285	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ EcC054300.40 263 FMCRKCGKAFAVRGDWRTHEKNC 285 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.31E-6	244	283	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.4E-6	259	283	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	263	283	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0030001	Biological Process	metal ion transport
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane
GO:0019867	Cellular Component	outer membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003723	Molecular Function	RNA binding
GO:0005507	Molecular Function	copper ion binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043531	Molecular Function	ADP binding
GO:0046873	Molecular Function	metal ion transmembrane transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MTDPYSSYLN GWINFNPLHH CSPSPPPPSS SFSSIATNNY YNSSHCFYSL YDYNHVYSAA 60 SLPHASPPPS PPLKEALPLL SCLSPARHEE EEQASLSTPM EVENPSCQKD SFFPRNSADV 120 ADEDDDGDGD GEAVTVALHL GLPSPSSVDL ISRLSSTEIS SDKELDQETT VASSGYFTSN 180 NKLNKGQYWI PTPAQILIGP TQFSCPLCFK TFNRYNNMQM LRLPCYCCAP GCKNNIDHPR 240 SKPLKDFRTL QTHYKRKHGI KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CSCGSDFKHK 300 RSLKDHIRAF GSGHTAYGIE DDCGFEEEEA ATSEIEQDNN FECSK

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MTDPYSSYLN GWINFNPLHH CSPSPPPPSS SFSSIATNNY YNSSHCFYSL YDYNHVYSAA  60
SLPHASPPPS PPLKEALPLL SCLSPARHEE EEQASLSTPM EVENPSCQKD SFFPRNSADV  120
ADEDDDGDGD GEAVTVALHL GLPSPSSVDL ISRLSSTEIS SDKELDQETT VASSGYFTSN  180
NKLNKGQYWI PTPAQILIGP TQFSCPLCFK TFNRYNNMQM LRLPCYCCAP GCKNNIDHPR  240
SKPLKDFRTL QTHYKRKHGI KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CSCGSDFKHK  300
RSLKDHIRAF GSGHTAYGIE DDCGFEEEEA ATSEIEQDNN FECSK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031820.1	0.0	PREDICTED: zinc finger protein WIP2
Swissprot	Q9SVY1	1e-108	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A059ABH9	0.0	A0A059ABH9_EUCGR; Uncharacterized protein
STRING	XP_010031820.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	3e-98	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]