PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033686.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 405aa    MW: 45309.2 Da    PI: 5.2517
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033686.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind59.21.1e-1810615542100
                   HHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  42 pkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100
                   ++yFkh+nf+SF+RQLn+YgF+k++ ++         weF+++ F+ gkk+ll++ikr+
  EcC033686.50 106 TTYFKHQNFSSFIRQLNTYGFRKIDPDR---------WEFANQGFRGGKKHLLKNIKRR 155
                   57***********************999.........*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-1554155IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.54E-1698155IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-6104116IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-15105155IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-17106155IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-6117129IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0005634Cellular Componentnucleus
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008094Molecular FunctionDNA-dependent ATPase activity
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MTATVTASFA SITSYISLAL ESRLTLHATV PFTLPHTPSL HLHPHPLTET TQNANGTFLF  60
PLPAKSRLDM VAEGSGGGGG GGGGVVPGTT VPSSVKREEP VVETGTTYFK HQNFSSFIRQ  120
LNTYGFRKID PDRWEFANQG FRGGKKHLLK NIKRRGRITK KQQGPTIPED IQTMEMDFQR  180
TELESEIRTL KEDQEILKPD ILELRQQQEC SLSEIGSVEE RIRCAECRQQ QMFLFLAKAV  240
KNPHFVEQLV QKRKPSREIQ AGKFIKKRRL LASEPDPNRC DFEGTNDDKS SACGDGQKGI  300
LSERVDPKPD GFANPLSNEN FTDALELKFN NVMLHEDAST IYDAMSEKLL DDSSLIAEGE  360
IGEELAINDS NLYMELEYLI EEPCDWGRVN ELKEQPVALM PSPAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154LKNIKRR
2251268KRKPSREIQAGKFIKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047549.20.0PREDICTED: heat stress transcription factor A-2
TrEMBLA0A059CNJ90.0A0A059CNJ9_EUCGR; Uncharacterized protein
STRINGXP_010047549.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.19e-47heat shock transcription factor A2