PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033061.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 379aa    MW: 42738.1 Da    PI: 4.7217
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033061.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind902.9e-28121242102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT..............XTTSEEEEES CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks..............kekiweFkhk 84 
                   Fl+k++ei+ed++++ ++swse  nsf+v+d ++fa ++Lpk+Fkh nf+SF+RQLn+Y    ++                      +++ weF+++
  EcC033061.10  12 FLTKTFEIVEDPATDPIVSWSEARNSFIVWDAHQFAATLLPKHFKHGNFSSFIRQLNTYYMITMSGCCLP--LllvcrkwmqgfrkvDPDRWEFANE 106
                   9**********************************************************87777765543..24677777777665449******** PP

                   XXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                    F  g+++ll++ikr+++
  EcC033061.10 107 GFLGGQRHLLKTIKRRRN 124
                   ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-308122IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.3E-338122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-478122IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.7E-2712122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-131235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-135062IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-136375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEGLGEAGPP PFLTKTFEIV EDPATDPIVS WSEARNSFIV WDAHQFAATL LPKHFKHGNF  60
SSFIRQLNTY YMITMSGCCL PLLLVCRKWM QGFRKVDPDR WEFANEGFLG GQRHLLKTIK  120
RRRNVLHNPR QPGGACVELG HYGLDSELER LRRDRGLLMA EVARLRQEQE QSRDHIFAME  180
QRIQRTERKQ QQMLAFLAKA CNNSSFIQQL VQRNARGRDI RGVEIGHKRR LTATPSLENL  240
QDEVTVAALG HGGARDSAIP MQEEMVTLES EMQTMFSAAL DDESSSDVNE LSAAPVPATR  300
GGNTDAVNQT ILEELLSEDL MTGNPEEEIL VGDQPEIDME AEDLVPGRTN ASEESQDLSQ  360
LEAVTPSSSL QQDKFMEEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-21312217129Heat shock factor protein 1
5d5v_B2e-21312217129Heat shock factor protein 1
5d5v_D2e-21312217129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121LKTIKRR
2149154RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047357.10.0PREDICTED: heat shock factor protein HSF30
SwissprotP411521e-115HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A059CMT10.0A0A059CMT1_EUCGR; Uncharacterized protein
STRINGXP_010047357.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.19e-96heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]