PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC031613.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 490aa    MW: 54806.6 Da    PI: 4.7226
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC031613.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.6e-053253591554
                   HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   ++N++f  Lr+llP+      +K +Ka+ L  + +Y+ sL
  EcC031613.30 325 KLNESFLALRSLLPPG-----TKKDKASLLATTRDYLGSL 359
                   89************97.....79*************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.892310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-7325376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-9325382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-6325364No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006334Biological Processnucleosome assembly
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0005524Molecular FunctionATP binding
GO:0008094Molecular FunctionDNA-dependent ATPase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDSAFLLDGD ARSNVLHLIA QSFGCRYICL WSYLTPTSCL CYLDGLFQEA AAASGGNNDN  60
VQARRLFDEY RQSLFILHPN SSHTQVPGLA FRNSNPYIEL REEDLSRLAS NSCQREFYQI  120
AVFMGCSSGE IELGFSNIPQ VDIQTQMMNL FPEDFSRQMA MRELARATEP NTTPMTNPPS  180
SSSSSLRSLS MDSPEYSSLL FSIPTTTSSF INPELALRDP SIAENITTQS MPIMTTTDTP  240
GTSTTGASSH PXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXKLNESF LALRSLLPPG TKKDKASLLA TTRDYLGSLK  360
EQVEDLRRKN TVLQAQLLPP KEPMSGGSPG DSSRVEVQTR TVSESTSQDR TVDLQVTVRG  420
DCPAMSLVIR ILEFLRQVRN VSLMSMDADT QVHESNIVNR VNLRLNVEGG EWDEPGFQEA  480
VRRVVADLAQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051453.11e-170PREDICTED: putative transcription factor bHLH041 isoform X1
RefseqXP_018726993.11e-170PREDICTED: putative transcription factor bHLH041 isoform X2
TrEMBLA0A059CUF41e-168A0A059CUF4_EUCGR; Uncharacterized protein
STRINGXP_010051453.11e-169(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-38bHLH family protein