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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC028693.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 72aa MW: 7958.28 Da PI: 10.4611 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.3 | 4.1e-18 | 11 | 54 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i ++ r vt+skRr+g++ KA+ L+ LC+a+vav++fs+ gk EcC028693.10 11 EIADQAARLVTYSKRRKGLFNKASQLCRLCGARVAVLVFSPAGK 54 588999***********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-19 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.231 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-22 | 4 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-13 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-21 | 12 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-13 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-13 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
MGKRRRTEIA EIADQAARLV TYSKRRKGLF NKASQLCRLC GARVAVLVFS PAGKPCSFGD 60 PSVDEIIGDY LR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010045944.1 | 7e-42 | PREDICTED: MADS-box protein SOC1-like | ||||
Refseq | XP_010046035.1 | 5e-42 | PREDICTED: MADS-box transcription factor 50-like | ||||
Refseq | XP_018718484.1 | 1e-43 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
Swissprot | Q4PSU4 | 4e-20 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A059D1D1 | 1e-39 | A0A059D1D1_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010045944.1 | 3e-41 | (Eucalyptus grandis) | ||||
STRING | XP_010045950.1 | 1e-41 | (Eucalyptus grandis) | ||||
STRING | XP_010046035.1 | 2e-41 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-22 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
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