PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC025730.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 137aa MW: 15694.8 Da PI: 9.8861 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 74.7 | 2.2e-23 | 5 | 79 | 54 | 127 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 e+ew+fFs+r+ ky +g+r+nr+++ gyWkatg dk++ls+ +++ g+kk+L+ y+gr pk +kt+W+mhe r EcC025730.10 5 AEEEWFFFSPRNWKYLNGTRPNRTAALGYWKATGGDKPILSSsGSRCLGVKKVLTSYRGRPPKEVKTNWTMHEDR 79 478*************************************9867777*************************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.633 | 1 | 103 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-27 | 4 | 90 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-9 | 8 | 77 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
KAVFAEEEWF FFSPRNWKYL NGTRPNRTAA LGYWKATGGD KPILSSSGSR CLGVKKVLTS 60 YRGRPPKEVK TNWTMHEDRL LDHNRHYSHQ LGGPLLVSFL FSSSESEIGS INHGNYESRF 120 CHSIWIRACI LYNLPSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-28 | 1 | 86 | 65 | 148 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-28 | 1 | 86 | 65 | 148 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-28 | 1 | 86 | 65 | 148 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-28 | 1 | 86 | 65 | 148 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-28 | 1 | 86 | 68 | 151 | NAC domain-containing protein 19 |
3swm_B | 3e-28 | 1 | 86 | 68 | 151 | NAC domain-containing protein 19 |
3swm_C | 3e-28 | 1 | 86 | 68 | 151 | NAC domain-containing protein 19 |
3swm_D | 3e-28 | 1 | 86 | 68 | 151 | NAC domain-containing protein 19 |
3swp_A | 3e-28 | 1 | 86 | 68 | 151 | NAC domain-containing protein 19 |
3swp_B | 3e-28 | 1 | 86 | 68 | 151 | NAC domain-containing protein 19 |
3swp_C | 3e-28 | 1 | 86 | 68 | 151 | NAC domain-containing protein 19 |
3swp_D | 3e-28 | 1 | 86 | 68 | 151 | NAC domain-containing protein 19 |
4dul_A | 3e-28 | 1 | 86 | 65 | 148 | NAC domain-containing protein 19 |
4dul_B | 3e-28 | 1 | 86 | 65 | 148 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021637435.1 | 5e-38 | NAC transcription factor 29-like | ||||
Swissprot | Q8H4S4 | 3e-31 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | A0A218Y3Q2 | 5e-39 | A0A218Y3Q2_PUNGR; Uncharacterized protein | ||||
STRING | POPTR_0011s05760.1 | 4e-35 | (Populus trichocarpa) | ||||
STRING | cassava4.1_027253m | 4e-35 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 5e-33 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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