PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC024405.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 312aa    MW: 35148.4 Da    PI: 5.4921
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC024405.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.6e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l d++++ G+g +W + +++  ++R++k+c++rw++yl
     EcC024405.50 14 RGPWSPEEDAKLRDYIEKNGTGgNWIALPQKADLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding33.87.6e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd  +  + +  G++ W+ Ia+ ++ gRt++++k++w++
     EcC024405.50  69 GEFSIEEDRVICTLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      78999****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.834962IPR017930Myb domain
SuperFamilySSF466899.61E-2711109IPR009057Homeodomain-like
SMARTSM007171.2E-101364IPR001005SANT/Myb domain
PfamPF002493.5E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-231569IPR009057Homeodomain-like
CDDcd001671.10E-81662No hitNo description
PROSITE profilePS5129421.13363117IPR017930Myb domain
SMARTSM007179.0E-1067115IPR001005SANT/Myb domain
PfamPF002491.3E-969111IPR001005SANT/Myb domain
CDDcd001677.01E-770113No hitNo description
Gene3DG3DSA:1.10.10.607.1E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007034Biological Processvacuolar transport
GO:0008152Biological Processmetabolic process
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0004462Molecular Functionlactoylglutathione lyase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLRDYIE KNGTGGNWIA LPQKADLKRC GKSCRLRWLN  60
YLRPNIKHGE FSIEEDRVIC TLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMSV  120
IPQFNQRKAP PPFPDSYQNS PLSLSSQMLP PLSLDSSSQY YACGLNKQFA SHEFASLPQY  180
LSTNDNNSLG NPNNCSSFQA QEGYYSPLKE SNNFMFGGEG SCSCSDGSSG GQIGQTREII  240
KQEEMGFQDY SIYSDYAYQC VEKTNGYFGE NIAESYDLED VKTLMGSTSL SCNSSILDEN  300
KEELKLMPMY YF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045316.10.0PREDICTED: transcription factor RAX2
TrEMBLA0A059DA950.0A0A059DA95_EUCGR; Uncharacterized protein
STRINGXP_010045316.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-76myb domain protein 36