PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC017141.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | FAR1 | ||||||||
Protein Properties | Length: 616aa MW: 70528 Da PI: 4.5336 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.3 | 4.4e-22 | 117 | 201 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+Y+ke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ +++w+v++++leHnH++ EcC017141.20 117 NYYNTYSKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAS-----SRRKETRTGCLAMIRLRLVGSNRWRVDEVKLEHNHSFD 201 69****************************************98877.....8999*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-19 | 117 | 201 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.4E-24 | 320 | 412 | IPR018289 | MULE transposase domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006284 | Biological Process | base-excision repair | ||||
GO:0006289 | Biological Process | nucleotide-excision repair | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0003684 | Molecular Function | damaged DNA binding | ||||
GO:0003906 | Molecular Function | DNA-(apurinic or apyrimidinic site) lyase activity | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016799 | Molecular Function | hydrolase activity, hydrolyzing N-glycosyl compounds | ||||
GO:0043531 | Molecular Function | ADP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
VEQGSPDSEE LIEEEAHVLE IDGDEIENDS EEELELNDGE HELELNDGEQ DLELNDGEQV 60 LELNGVEQGL EILEEEEEEI VGDGSVGTDV HNGTSDVKEY PPPFVGMEFD TYDDAYNYYN 120 TYSKELGFAI RVKSSWTKRN SKEKRGAVLC CNCEGFKTIK EASSRRKETR TGCLAMIRLR 180 LVGSNRWRVD EVKLEHNHSF DPLRAKNSKS HKRMDAGAKH KLEPNLDVEV RTIKLYRTPV 240 IDTMGCGSSY SCERETGFDR AKRLKLNKGD AQVMHDFFNQ MQLVDPNFLY LMDLGDEGYL 300 KNVFWIDSRS RAAYGYFGDV VVFETMNLSN NCEIPLFAYV GVNHHGNNVL LGCALISDSS 360 LETYIWLFRA WLTCVSGRPP QTIITDQCQA MQSAIAEVFP RAHHRLSLSY VKQSIREKVT 420 VLQESEAFLT LLDSTVYDIP RVEEFETAWE KIMQRFGIKD QEWLQALYET RERWAPVYSK 480 DTFFAGQNGF HRGNSKSLFF DGDVLQQTSL KEFLLAYESF LQQKKQKELL DDLESRDLSA 540 MLKTSSHYEL QLSKLYTKAI FTKFQDEVVM MSSCLGVTQI HASGPIVTYL VKERDGDGDL 600 EDVRHFEVIY DKAGTE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010063490.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 8 | ||||
Refseq | XP_010063492.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 8 | ||||
Refseq | XP_010063493.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 8 | ||||
Swissprot | Q9S793 | 0.0 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A059BXP9 | 0.0 | A0A059BXP9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010063490.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14233 | 20 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 0.0 | FAR1-related sequence 8 |
Publications ? help Back to Top | |||
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