PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC017141.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 616aa    MW: 70528 Da    PI: 4.5336
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC017141.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.34.4e-22117201190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   ++Yn+Y+ke+GF +r+++s ++++++e   + ++C++eg+++ ++ +     ++r+etrtgC a++++++  +++w+v++++leHnH++ 
  EcC017141.20 117 NYYNTYSKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAS-----SRRKETRTGCLAMIRLRLVGSNRWRVDEVKLEHNHSFD 201
                   69****************************************98877.....8999*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-19117201IPR004330FAR1 DNA binding domain
PfamPF105516.4E-24320412IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006284Biological Processbase-excision repair
GO:0006289Biological Processnucleotide-excision repair
GO:0007165Biological Processsignal transduction
GO:0003684Molecular Functiondamaged DNA binding
GO:0003906Molecular FunctionDNA-(apurinic or apyrimidinic site) lyase activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016799Molecular Functionhydrolase activity, hydrolyzing N-glycosyl compounds
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
VEQGSPDSEE LIEEEAHVLE IDGDEIENDS EEELELNDGE HELELNDGEQ DLELNDGEQV  60
LELNGVEQGL EILEEEEEEI VGDGSVGTDV HNGTSDVKEY PPPFVGMEFD TYDDAYNYYN  120
TYSKELGFAI RVKSSWTKRN SKEKRGAVLC CNCEGFKTIK EASSRRKETR TGCLAMIRLR  180
LVGSNRWRVD EVKLEHNHSF DPLRAKNSKS HKRMDAGAKH KLEPNLDVEV RTIKLYRTPV  240
IDTMGCGSSY SCERETGFDR AKRLKLNKGD AQVMHDFFNQ MQLVDPNFLY LMDLGDEGYL  300
KNVFWIDSRS RAAYGYFGDV VVFETMNLSN NCEIPLFAYV GVNHHGNNVL LGCALISDSS  360
LETYIWLFRA WLTCVSGRPP QTIITDQCQA MQSAIAEVFP RAHHRLSLSY VKQSIREKVT  420
VLQESEAFLT LLDSTVYDIP RVEEFETAWE KIMQRFGIKD QEWLQALYET RERWAPVYSK  480
DTFFAGQNGF HRGNSKSLFF DGDVLQQTSL KEFLLAYESF LQQKKQKELL DDLESRDLSA  540
MLKTSSHYEL QLSKLYTKAI FTKFQDEVVM MSSCLGVTQI HASGPIVTYL VKERDGDGDL  600
EDVRHFEVIY DKAGTE
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063490.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8
RefseqXP_010063492.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8
RefseqXP_010063493.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8
SwissprotQ9S7930.0FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A059BXP90.0A0A059BXP9_EUCGR; Uncharacterized protein
STRINGXP_010063490.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142332021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.10.0FAR1-related sequence 8
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]