![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC015739.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 187aa MW: 21037.8 Da PI: 9.2029 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 78.4 | 1.6e-24 | 7 | 83 | 52 | 128 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++++fF++ ++++a+g r++r+t+ gyWkatg+ +v+s++++++g+kk++vfy g+ap+g+kt+W ++eyr+ EcC015739.30 7 REDKEQCFFFAPMQERQARGGRPSRSTAVGYWKATGSPCQVYSSENKVIGMKKSMVFYVGKAPTGRKTKWKLNEYRA 83 4566799********************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.609 | 1 | 116 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.85E-24 | 6 | 115 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-10 | 13 | 82 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016485 | Biological Process | protein processing | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0005774 | Cellular Component | vacuolar membrane | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0005794 | Cellular Component | Golgi apparatus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
LSGEMCREDK EQCFFFAPMQ ERQARGGRPS RSTAVGYWKA TGSPCQVYSS ENKVIGMKKS 60 MVFYVGKAPT GRKTKWKLNE YRAIEIISPP ASNSSTSSVP MFRLRHEFTL CRVYVVSGSS 120 RAFDRRPLKL VARETIQDGD GGGSSSGESA SPSGSVIENN VEISHFMKTI SMEKEEPIWD 180 WEQLNWF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-20 | 10 | 121 | 70 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-20 | 10 | 121 | 70 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-20 | 10 | 121 | 70 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-20 | 10 | 121 | 70 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-20 | 10 | 121 | 73 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-20 | 10 | 121 | 73 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-20 | 10 | 121 | 73 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-20 | 10 | 121 | 73 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-20 | 10 | 121 | 73 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-20 | 10 | 121 | 73 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-20 | 10 | 121 | 73 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-20 | 10 | 121 | 73 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-20 | 10 | 121 | 70 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-20 | 10 | 121 | 70 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034224.1 | 1e-100 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 9e-59 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A059AB41 | 2e-99 | A0A059AB41_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034224.1 | 1e-100 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44350.2 | 7e-59 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
---|---|---|---|
|