![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC012458.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 192aa MW: 21461.2 Da PI: 10.2296 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.7 | 1.1e-33 | 113 | 171 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg+H+h+ EcC012458.20 113 LDDGYRWRKYGQKAVKNNRFPRSYYRCTHPGCNVKKQVQRLSKDEGMVVTTYEGTHTHP 171 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-35 | 98 | 171 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-30 | 105 | 172 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.78 | 108 | 173 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-39 | 113 | 172 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-27 | 114 | 171 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MERHQMLFPL SADVRPPPPQ PPLTSFPFAF EAGGSRVQSS TGFGSDLMSS SVHGFLGLSG 60 AEDGIAQRSK AEYDAAHGSS VSGGAEKIGK KKGEKKVRRP RIAFQTRSQV DILDDGYRWR 120 KYGQKAVKNN RFPRSYYRCT HPGCNVKKQV QRLSKDEGMV VTTYEGTHTH PIQKSTENFE 180 HILSQMQIYP PF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-28 | 103 | 172 | 7 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 2e-28 | 103 | 172 | 7 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015869717.1 | 7e-69 | probable WRKY transcription factor 75 | ||||
Refseq | XP_015871944.1 | 7e-69 | probable WRKY transcription factor 75 | ||||
TrEMBL | A0A059AQ42 | 1e-106 | A0A059AQ42_EUCGR; Uncharacterized protein | ||||
STRING | Gorai.001G273100.1 | 4e-68 | (Gossypium raimondii) | ||||
STRING | XP_010250654.1 | 4e-68 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13080.1 | 2e-56 | WRKY DNA-binding protein 75 |