PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS74439.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

MYB_related

Protein Properties

Length: 1027aa MW: 114807 Da PI: 9.7729

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS74439.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5.1e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 rW+teE +++d ++ G++ Wk++a + +R+++++ EPS74439.1 46 RWSTEELTRFYDSYRKNGKD-WKKVAGAVR-NRSPEMI 81 9***************99.*****.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0027	43	91	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.65E-8	43	92	IPR009057	Homeodomain-like
CDD	cd00167	0.00102	46	89	No hit	No description
Pfam	PF00249	7.2E-6	46	81	IPR001005	SANT/Myb domain
Pfam	PF06584	5.9E-31	583	683	IPR033471	DIRP domain
SMART	SM01135	5.0E-51	583	684	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1027 aa Download sequence Send to blast
MGPPRKSRNV NKRYSYINEV SPKRDEDVTK RSSSRKRKLA DMLGPRWSTE ELTRFYDSYR 60 KNGKDWKKVA GAVRNRSPEM IEALYTMNKA YLSLPHGTAS SAGLIAMMTD HYSNFVGSDS 120 DQESNDAAGS SRRSQKRARG RFSGVASKDL DEQYASHSLS VAPNYECLSL LKKKRTGTRP 180 RPVGKRTPRF PVAVSHEITK AGNYSSSNKL GLKSDNNAGD DEVAHKIAMA LTEASQRVGS 240 PQISGTPSRI AESVMSSPFR NAQRKVTVND VEGSTEADGE LKSPQKGRKH EEKKIEADFN 300 SGSHSDDIKE ECSGTEEGLG MDTVRNKFDY EADVSKIYNS LRPSQSKKAL FSNESKLQIK 360 DEENRDHVDE SAPVESSPPI RAKRKSSGIR MKGCLLSNSE VFPSKMPKNR KGAGLDDRSV 420 LEGNQNSHLF STKTRKNKKT PKSKVQKMEI NARNHVNGSP GAEAGDQRKQ PVSKNKKTLQ 480 SGSAKLMKAP ENTGDADARK EGIDAAQSPT HIHSINQVTS RNKVKSSRKT ILKKPEVLKD 540 LNFSEKISSD MGSLHETAVI LKDKLCNCLS NPLLRRFCTF EWFYSAIDYP WFAKREFDEY 600 LHHVGLGHVP RLTHVEWSFI RSSLGKPRRF SQQFLKQEKA KLNLYRDSVR KHYTELREGV 660 REGLPTDLSR PLSVGQRVVA IHPKTREIHD GNVLTVDHNK CRVQFNRNEL GVEFVTDIDC 720 MPLNPIEYMP PILGRQSAVG DTYFESSNEQ KANGRASEYE NLDNINCASA FLNPPSSLKE 780 AKTRSGLVDA YSQAKEADVR ALALLNRGLK KKEAIVMELR RMNDEILESQ ACDGDLSWKG 840 SEPFKKQYAA VLIQLSDVNE QVSSALHSLR ERNAYQGRRH PLTDQPGSHL NDIMESSRTK 900 AQSMVNAAIQ AILSLKGRDY NVEETIDFVN ERIPLDDDDS SSAKEVKNFA SSEVEAQIPR 960 ELIAKCVATL IMIQKCTERQ FPPCDVAQIL DSAVTSLQPR SSNNLPVYGE IQKCVGIIKN 1020 QILALIP

Sequence ? help Back to Top

Protein Sequence Length: 1027 aa Download sequence Send to blast

MGPPRKSRNV NKRYSYINEV SPKRDEDVTK RSSSRKRKLA DMLGPRWSTE ELTRFYDSYR  60
KNGKDWKKVA GAVRNRSPEM IEALYTMNKA YLSLPHGTAS SAGLIAMMTD HYSNFVGSDS  120
DQESNDAAGS SRRSQKRARG RFSGVASKDL DEQYASHSLS VAPNYECLSL LKKKRTGTRP  180
RPVGKRTPRF PVAVSHEITK AGNYSSSNKL GLKSDNNAGD DEVAHKIAMA LTEASQRVGS  240
PQISGTPSRI AESVMSSPFR NAQRKVTVND VEGSTEADGE LKSPQKGRKH EEKKIEADFN  300
SGSHSDDIKE ECSGTEEGLG MDTVRNKFDY EADVSKIYNS LRPSQSKKAL FSNESKLQIK  360
DEENRDHVDE SAPVESSPPI RAKRKSSGIR MKGCLLSNSE VFPSKMPKNR KGAGLDDRSV  420
LEGNQNSHLF STKTRKNKKT PKSKVQKMEI NARNHVNGSP GAEAGDQRKQ PVSKNKKTLQ  480
SGSAKLMKAP ENTGDADARK EGIDAAQSPT HIHSINQVTS RNKVKSSRKT ILKKPEVLKD  540
LNFSEKISSD MGSLHETAVI LKDKLCNCLS NPLLRRFCTF EWFYSAIDYP WFAKREFDEY  600
LHHVGLGHVP RLTHVEWSFI RSSLGKPRRF SQQFLKQEKA KLNLYRDSVR KHYTELREGV  660
REGLPTDLSR PLSVGQRVVA IHPKTREIHD GNVLTVDHNK CRVQFNRNEL GVEFVTDIDC  720
MPLNPIEYMP PILGRQSAVG DTYFESSNEQ KANGRASEYE NLDNINCASA FLNPPSSLKE  780
AKTRSGLVDA YSQAKEADVR ALALLNRGLK KKEAIVMELR RMNDEILESQ ACDGDLSWKG  840
SEPFKKQYAA VLIQLSDVNE QVSSALHSLR ERNAYQGRRH PLTDQPGSHL NDIMESSRTK  900
AQSMVNAAIQ AILSLKGRDY NVEETIDFVN ERIPLDDDDS SSAKEVKNFA SSEVEAQIPR  960
ELIAKCVATL IMIQKCTERQ FPPCDVAQIL DSAVTSLQPR SSNNLPVYGE IQKCVGIIKN  1020
QILALIP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552958.1	0.0	protein ALWAYS EARLY 3-like
Refseq	XP_020552959.1	0.0	protein ALWAYS EARLY 3-like
Refseq	XP_020552960.1	0.0	protein ALWAYS EARLY 3-like
TrEMBL	S8D3Y4	0.0	S8D3Y4_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.G00183.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-171	DNA binding

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]