PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 181aa MW: 19485.7 Da PI: 8.3109

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS72462.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.5	5.9e-38	6	63	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++P+Ggg+rk k EPS72462.1 6 PEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPIGGGSRKGAK 63 57899*************************************************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-24	2	58	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-33	8	62	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	9	63	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	11	47	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
AMPSEPEHLP CPRCDSTNTK FCYYNNYNFS QPRHFCKSCR RYWTHGGTLR DIPIGGGSRK 60 GAKRPRPAAA VDVGASFPCH DSRRGDLSAP SQGLIPMNGS FTSLLNNHHH HHHHQNVGGI 120 LGFGFEEVGF GRSGWPFYGP VSDPIAAAQP WHRLQNGDGG GGGGGFMGGG DCIATFPDLA 180 I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	66	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00593	DAP	Transfer from AT5G66940	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099306.1	3e-51	dof zinc finger protein DOF3.4
Swissprot	Q9FGD6	7e-36	DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBL	S8EIR7	1e-130	S8EIR7_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.H00486.1.p	9e-46	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	7e-33	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]