PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS66527.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HSF

Protein Properties

Length: 207aa MW: 24103.7 Da PI: 10.6938

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS66527.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.9	9.3e-35	19	111	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k++e++ed+ ++++isw e +nsf+v+d+ +f++++Lp+yFkhsnfaSF+RQLn+YgF+kv+ ++ weF+++ F +g+k+ll +ik EPS66527.1 19 FLLKTFEMVEDPYTDSIISWGEAKNSFIVWDSFNFSTSLLPRYFKHSNFASFIRQLNTYGFRKVDPDR---------WEFANEGFLAGNKHLLVTIK 106 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r++++ EPS66527.1 107 RRRNS 111 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	8.2E-54	15	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.26E-32	16	108	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.3E-36	16	108	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.2E-18	19	42	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.0E-29	19	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	57	69	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	58	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	70	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
SSATPRPMEG LHEICPPPFL LKTFEMVEDP YTDSIISWGE AKNSFIVWDS FNFSTSLLPR 60 YFKHSNFASF IRQLNTYGFR KVDPDRWEFA NEGFLAGNKH LLVTIKRRRN SRPPPAAVEI 120 GGTEEELERL KRERSVLVAE VVKLKRHQRN SEQRLADVED RLRVMERKQH QVMPFLAGVF 180 KNRRQLAAAN RHVEIGQKRR LMMSPGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	8e-24	17	111	18	123	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017619183.1	2e-91	PREDICTED: heat shock factor protein HSF30 isoform X1
Swissprot	P41152	1e-85	HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBL	S8E2M6	1e-151	S8E2M6_9LAMI; Uncharacterized protein (Fragment)
STRING	Gorai.013G220400.1	4e-88	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA572	24	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-78	heat shock transcription factor A2

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Scharf KD,Rose S,Thierfelder J,Nover L Two cDNAs for tomato heat stress transcription factors. Plant Physiol., 1993. 102(4): p. 1355-6 [PMID:8278556]