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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS64438.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | ARF | ||||||||
Protein Properties | Length: 720aa MW: 79895 Da PI: 5.4734 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.2 | 8.5e-25 | 143 | 244 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F ++++ +l+ EPS64438.1 143 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPS-QELVVRDLHENTWNFRHIYRGQPKRHLLTTGWSMFVGSKRLRAGDSVLFV--RDEKSQLL 238 99*********************999*****9666554.59************************************************..4577778* PP EEEE-S CS B3 94 vkvfrk 99 v+v+r+ EPS64438.1 239 VGVRRA 244 ***996 PP | |||||||
2 | Auxin_resp | 116.2 | 2.9e-38 | 269 | 352 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++++F+++YnPra++seFv++++k++ka+ +++s+GmRf m+fete+ss+rr++Gt++++sd+dp+rWpnSkWrs++ EPS64438.1 269 AAHAAANRTPFTIFYNPRACSSEFVIPFAKYRKAVFsTQLSIGMRFGMMFETEESSKRRYMGTISSISDVDPLRWPNSKWRSIQ 352 79*******************************98659*******************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.29E-45 | 130 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.6E-42 | 136 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.86E-23 | 142 | 243 | No hit | No description |
PROSITE profile | PS50863 | 13.042 | 143 | 245 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.4E-24 | 143 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-22 | 143 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-33 | 269 | 352 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.2E-9 | 614 | 702 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.91 | 617 | 700 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 6.38E-9 | 636 | 695 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MASVEENVKP GGGVSVGDGV KLLSEMQDSS ICRKQINCEL WHACAGPLVT LPQLGSLVYY 60 FPQGHSEQVA VSTNRAATTP QIPNYPNLPP QLLCQVHNLT LHADRDTDEI YAQMSLQPVC 120 SDKDVIPIPD FGLKPSKHPS EFFCKTLTAS DTSTHGGFSV PRRAAEKLFP PLDYSMQPPS 180 QELVVRDLHE NTWNFRHIYR GQPKRHLLTT GWSMFVGSKR LRAGDSVLFV RDEKSQLLVG 240 VRRAIRQQAT LPSSVLSADC MHIGILAAAA HAAANRTPFT IFYNPRACSS EFVIPFAKYR 300 KAVFSTQLSI GMRFGMMFET EESSKRRYMG TISSISDVDP LRWPNSKWRS IQVDWDEPGC 360 GSSDRRNRVS PWEIETPESL FILPSMASNV EKHPFHSPFL LGGAAPPTEF GALMNFQSPP 420 PLISEELMKM LVVKPQKTSS HATTIVPNDV GVMKSAEEKA SQQCLLLANG WIQNIEDDSS 480 MSSALEAASG WIQVEESPPP SQVDFASYHY STLPPLEGQA ELWDSSSLQE EYHHYNSDGV 540 DVKDDLAAAA AGDIIYNCMD VDGSSIVLDE ICGKNNSNHQ DPSSQDVQSS AGTDSRNFNH 600 NSRSTSWHHH QLTPRFRTYT KIQKAGSVGR SIDVSGFKNY EELRVEIERM FGLEGVLNDM 660 RSGWTLVYVD FENDVLLVGD DPWEEFVGCV RCIRILSPSE VRQMGEEGMQ LLNSVGGIGM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 22 | 379 | 33 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835742.1 | 0.0 | PREDICTED: auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | S8DN62 | 0.0 | S8DN62_9LAMI; Auxin response factor (Fragment) | ||||
STRING | Migut.C00816.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5859 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |