PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EPS63277.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

M-type_MADS

Protein Properties

Length: 137aa MW: 15637.6 Da PI: 9.2369

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63277.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.1	1.1e-18	17	64	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+n+ + tfskRr g+ KKA+ELS+LC+++v v+ifs+t+ y + EPS63277.1 17 RISNQDDLYATFSKRRLGLYKKASELSTLCGVDVGVVIFSPTDVPYSF 64 89***************************************9876665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.189	8	68	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.7E-24	8	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.12E-23	9	83	IPR002100	Transcription factor, MADS-box
CDD	cd00120	3.95E-27	9	67	No hit	No description
PRINTS	PR00404	2.5E-15	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-21	17	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-15	30	45	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-15	45	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MSGGRQSRGR QKIPIRRISN QDDLYATFSK RRLGLYKKAS ELSTLCGVDV GVVIFSPTDV 60 PYSFFSPTME SVLRRNNNNN SAAAVDEYAR LVEARARARI EECNARLDGM TEEREALKRR 120 DKAADEEMER CRDGGWW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012855809.1	2e-55	PREDICTED: myocyte-specific enhancer factor 2A-like
TrEMBL	S8DTY4	4e-96	S8DTY4_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.A00408.1.p	3e-54	(Erythranthe guttata)
STRING	Migut.K00930.1.p	2e-54	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA382	20	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-23	AGAMOUS-like 61

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]