PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63021.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

GRAS

Protein Properties

Length: 527aa MW: 57696.3 Da PI: 5.1363

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63021.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	255.2	2.4e-78	163	526	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 v+ L++ Ae++++++++la+ +Larl+e+ +sp+g+p+qR+a+yf+eAL++ l+ p ++ +++ +++++a+k+f +sPi++fs +ta EPS63021.1 163 VDELIRLAECFETNSAQLAHMILARLNERlRSPAGKPLQRIAFYFKEALQSLLTA--------APHASAGSSKIIQTIKAQKIFAAISPIPTFSSFTAG 253 678***********************99********************9........44444455679********************* PP GRAS 100 qaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 qa+lea++g vH++Dfdi+ G++W++++++ a+ + ++ p lRi +v++ g ++e++ ++e+L++fA+el+++f+++++ ++++e + EPS63021.1 254 QALLEAIDGGapVNVHVVDFDIGFGGHWAPFMKEVAENAqlhhktAPLPALRISAVVA--DGYETETNLIRENLTEFARELNIRFDIEFIPVRNFEHQS 350 *****966678***************998776777667799*****..66************************99*** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleak.lpres.....ee 281 +++ r gE+++V l+ +++r +++ +++ sP++vv+v++e++ +++s+ + +++ le+ys l++s+ea+ + +++ ++ EPS63021.1 351 FKAVRSIDGEKTVVLLSPSIFRHI---------GAGFMNDLRRRSPQLVVLVDNEVQAgyGTSSYRQTLINGLEFYSNLLESIEASnFTAAAgsggwDW 440 *****************998.........347***************665449******************6553444445588899 PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +k+E ++l ++i ++ g++ + r++l ++G++pv ls++a qa++llr+v+++g++v + +++++l+W+drp+ ++SaWr EPS63021.1 441 IRKIETFVLYPKILEIMQSIGRR-------GTTVRDALAASGLRPVILSQFADVQADCLLRRVQVRGFHVVKPHAEMLLCWHDRPVAATSAWR 526 9*************99997.......345589******************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	33.091	136	506	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.4E-76	163	526	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0030154	Biological Process	cell differentiation
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MKVPFITTGG GGHIASKTTI SSAVPPPPAY EPKSVLEIRG SPSPVTEKPS SAAAGDSSVR 60 PEGTESNHAL MNPQVEDWDW MTELGLNDDD DDGSSSPVSR REELPAVQYQ NLIDFPAGSF 120 DSGQFPEMEF GLLPDFPPAY GDSVEGLSGE LATGNWNAGF DFVDELIRLA ECFETNSAQL 180 AHMILARLNE RLRSPAGKPL QRIAFYFKEA LQSLLTAAPH ASAGSSKIIQ TIKAQKIFAA 240 ISPIPTFSSF TAGQALLEAI DGGAPVNVHV VDFDIGFGGH WAPFMKEVAE NAQLHHKTAP 300 LPALRISAVV ADGYETETNL IRENLTEFAR ELNIRFDIEF IPVRNFEHQS FKAVRSIDGE 360 KTVVLLSPSI FRHIGAGFMN DLRRRSPQLV VLVDNEVQAG YGTSSYRQTL INGLEFYSNL 420 LESIEASNFT AAAGSGGWDW IRKIETFVLY PKILEIMQSI GRRGTTVRDA LAASGLRPVI 480 LSQFADVQAD CLLRRVQVRG FHVVKPHAEM LLCWHDRPVA ATSAWRY

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MKVPFITTGG GGHIASKTTI SSAVPPPPAY EPKSVLEIRG SPSPVTEKPS SAAAGDSSVR  60
PEGTESNHAL MNPQVEDWDW MTELGLNDDD DDGSSSPVSR REELPAVQYQ NLIDFPAGSF  120
DSGQFPEMEF GLLPDFPPAY GDSVEGLSGE LATGNWNAGF DFVDELIRLA ECFETNSAQL  180
AHMILARLNE RLRSPAGKPL QRIAFYFKEA LQSLLTAAPH ASAGSSKIIQ TIKAQKIFAA  240
ISPIPTFSSF TAGQALLEAI DGGAPVNVHV VDFDIGFGGH WAPFMKEVAE NAQLHHKTAP  300
LPALRISAVV ADGYETETNL IRENLTEFAR ELNIRFDIEF IPVRNFEHQS FKAVRSIDGE  360
KTVVLLSPSI FRHIGAGFMN DLRRRSPQLV VLVDNEVQAG YGTSSYRQTL INGLEFYSNL  420
LESIEASNFT AAAGSGGWDW IRKIETFVLY PKILEIMQSI GRRGTTVRDA LAASGLRPVI  480
LSQFADVQAD CLLRRVQVRG FHVVKPHAEM LLCWHDRPVA ATSAWRY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-17	196	526	36	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012847887.1	0.0	PREDICTED: scarecrow-like protein 15
TrEMBL	S8CET2	0.0	S8CET2_9LAMI; Uncharacterized protein
STRING	Migut.L00296.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8305	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36710.1	1e-118	GRAS family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]