![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT32481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 256aa MW: 27338 Da PI: 8.2424 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.2 | 3.2e-21 | 20 | 67 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie++ rqv fskRr+g++KKA+EL vLC+aeva ++fs+ gk + + EMT32481 20 KIESEEARQVCFSKRRAGLFKKASELAVLCGAEVAAVVFSPAGKAFSF 67 69*****************************************97766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.5E-34 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-28 | 11 | 81 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.703 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.22E-37 | 12 | 79 | No hit | No description |
PRINTS | PR00404 | 5.8E-20 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-26 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-20 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-20 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MATAPRRRAS MGRQKIEIRK IESEEARQVC FSKRRAGLFK KASELAVLCG AEVAAVVFSP 60 AGKAFSFGHP SVEAIFDRFV PSAAQHPGAV AAGAGLGASG DRNLAELNRQ YGELRTQLEA 120 EKARKERAEE AMAKERAAGN QMAAWLDADL RDMGEEELMA FAAALVEVQA AVSERANQVL 180 QEALNVGRSR SASRMLQAPP PHQQQQQLAG GGTFEFGGTS TNAGMEIQQK LLAVPPPPPP 240 GFAPGMDIVQ HGGFPY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-16 | 11 | 88 | 1 | 78 | MEF2 CHIMERA |
6byy_B | 3e-16 | 11 | 88 | 1 | 78 | MEF2 CHIMERA |
6byy_C | 3e-16 | 11 | 88 | 1 | 78 | MEF2 CHIMERA |
6byy_D | 3e-16 | 11 | 88 | 1 | 78 | MEF2 CHIMERA |
6bz1_A | 3e-16 | 11 | 88 | 1 | 78 | MEF2 CHIMERA |
6bz1_B | 3e-16 | 11 | 88 | 1 | 78 | MEF2 CHIMERA |
6bz1_C | 3e-16 | 11 | 88 | 1 | 78 | MEF2 CHIMERA |
6bz1_D | 3e-16 | 11 | 88 | 1 | 78 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185579.1 | 1e-176 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | M8D7N0 | 0.0 | M8D7N0_AEGTA; Agamous-like MADS-box protein AGL62 | ||||
STRING | EMT32481 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-30 | AGAMOUS-like 61 |