PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19631
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 247aa    MW: 25943.5 Da    PI: 8.4761
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19631genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.63.7e-191057249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              rienk  r + fskRr+g++ KA+EL v+C+aeva +++s  gk y +
  EMT19631 10 RIENKAARDICFSKRRQGLFRKANELAVMCGAEVAAVVYSRAGKAYSF 57
              8*******************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.83E-25171IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.245161IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-28160IPR002100Transcription factor, MADS-box
CDDcd002655.06E-32272No hitNo description
PRINTSPR004043.5E-18323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRKKIVIRR IENKAARDIC FSKRRQGLFR KANELAVMCG AEVAAVVYSR AGKAYSFGHP  60
SAEDIVDRFL RPAEQAGAAG AGMGAAVDPD RLAELQQKYN KLGADLDAVE QQKERWGEAI  120
AKGRAEGSQA AAWLDAVADQ RDMGDADMLA CMATLREAQV TVAALVNQVL QNGRRDKEAA  180
LAALPPQLLA GVGGFELGGT GQMMAVMPTP GFAVGGGFEL GGTSANGGGG GPEEGRAQWT  240
AIGRRWA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199886.11e-53agamous-like MADS-box protein AGL29
TrEMBLN1R4711e-175N1R471_AEGTA; Uncharacterized protein
STRINGEMT196311e-176(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-23AGAMOUS-like 61