 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
EMT14878 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 247aa MW: 27987.7 Da PI: 5.3999 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT14878 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 53.3 | 3.5e-17 | 9 | 60 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS..EEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg..klyeys 50
k+i+n+ r tf kRr g+lKKA+EL vLC+++ +++f +g kl++y+
EMT14878 9 KKIQNDVSRRATFGKRRRGLLKKAHELAVLCGVDLGLLVFDDDGagKLFDYC 60
689*************************************998522677775 PP
|
| 2 | K-box | 39.2 | 2.9e-14 | 89 | 178 | 8 | 96 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96
+ ++++++ + +a L++e + L+ + + Ge+L+s + eL +Leq+Le l k+R++K++ll +q+ e+ +k + l+++n Lr+
EMT14878 89 HHDDHQQQPSADIIAGLRREGDHLEASVTRQTGENLSSTaTAAELDELEQRLECVLGKVRETKDKLLEQQLGESHHKVHILEDQNSFLRR 178
4566677777788999*********99999******9862679*********************************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MGRGRTEMKK IQNDVSRRAT FGKRRRGLLK KAHELAVLCG VDLGLLVFDD DGAGKLFDYC 60
APNTSWSELI ERYESITKHQ FQFQGQGIHH DDHQQQPSAD IIAGLRREGD HLEASVTRQT 120
GENLSSTATA AELDELEQRL ECVLGKVRET KDKLLEQQLG ESHHKVHILE DQNSFLRRLV 180
IVNDIAACLL SCYVYWLPEC VFTLCQMGEE GQQRAAVEAS AVPPKLPEVE EEELTTLRLW 240
PRQLPDV
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG670306 | 1e-72 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
