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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT13776 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C3H | ||||||||
Protein Properties | Length: 707aa MW: 79179.4 Da PI: 6.3564 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.2 | 1e-11 | 253 | 278 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++t lC++++ GtCk+G +CkF+H+ EMT13776 253 PGTILCSYYMNRGTCKFGTNCKFHHP 278 5899*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.0E-7 | 252 | 279 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.521 | 252 | 280 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-7 | 253 | 281 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-9 | 254 | 278 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-6 | 255 | 281 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF12776 | 1.4E-21 | 419 | 512 | IPR024752 | Myb/SANT-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MGDSPGSATP SSSMNLANSK AGEIKQLQPE YPRWPGQPDR FYYLKFGSCT SNLEIGEISE 60 PDCTIGASPI DPSSVASATP PSLLNLANSE TGEIKQPEYP RWPVEADCSM SDSSLSSVSI 120 TTPPSEDKSR IKKKSITAPL GDPSSHGSAA PPADSETGEK QPEPEYPLRP GKSDCSYYVK 180 FGSCSPGLQR DNWVGRNSSR ASNSSEYKQQ KNLTFNTNTF QYIFDKACNY NRHEGKTKVK 240 QVKLNFLGLP LRPGTILCSY YMNRGTCKFG TNCKFHHPDP ESEDAILNAP QHTTQGSYQM 300 NLSTKHVQRA LNGHSVPLVT SPTIGTSEII PTQGVNPCPE WSKYQMTKIH KNIRWPRISK 360 TETIFDIQNM LFCFLEIGFI LLFEVIQILL HDISPKKKGQ LHIIFLWQMD ENKQGKSDWD 420 PFTTKVFCDI CTDEVLSGNR PTDHLNGIGY ENLCAKFNEK TKKGYNHKQF ESKWESLKKD 480 YQTWKALMES EDNLGQGTKM NTISASLEWW AKKMEVMPDC GKFCFAPLEN VNLLNIMFED 540 MVDLGSTSPE TNLEVNATIR SEQGPGDGND VGIIDKYVNE QSKEALLQQS SKTEPNLVKL 600 KTNYVHAELN DLVNFEENLS PSNLATSMRI DRVGSNISEI MELVVGAGAE EGSDEHFIAT 660 QLFIRAEHRE MFLTLKTPRG RLRWLKKMCQ LKDPTSSVAD VYSVKLI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | R7W2U6 | 0.0 | R7W2U6_AEGTA; Zinc finger CCCH domain-containing protein 43 | ||||
STRING | EMT13776 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP49531 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 2e-21 | C3H family protein |