PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C2H2

Protein Properties

Length: 243aa MW: 26728.2 Da PI: 7.9626

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT12137	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	71	90	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ EMT12137 71 FSCPVCFKTFNRYNNMQMHM 90 89*****************9 PP
2	zf-C2H2	11.9	0.00067	157	177	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F k + ++H +++ EMT12137 157 CRRCGKAFAVKGDWRTHEKNC 177 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.17E-5	67	93	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.1E-6	71	90	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.64	71	98	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	73	93	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.36E-6	137	175	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.1E-5	141	175	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.538	155	175	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MGLPAAEADL LSGLSGRAAE EDEEEEDDCK PGGGHEEVPL GFSSTAPIGR LNKGQYWIPT 60 PSQILIGPTQ FSCPVCFKTF NRYNNMQMHM WGHGSQYRKG PESLRGVQPT AMLRLPCYCC 120 AAGCRNNIDH PRAKPLKDFR TLQTHYKRKH GLKPFLCRRC GKAFAVKGDW RTHEKNCGKL 180 WYCLCGSEFK HKRSLKDHAR AFGHGHGAFG CNGAAGGDGS FDDDDEGAVS EIEHDVVCGA 240 AAR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC256244	0.0	AC256244.1 Hordeum vulgare clone HV_Mba442-A05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187283.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-117	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A3B6TPK3	1e-180	A0A3B6TPK3_WHEAT; Uncharacterized protein
TrEMBL	A0A453RJ99	0.0	A0A453RJ99_AEGTS; Uncharacterized protein
TrEMBL	M8B5W4	0.0	M8B5W4_AEGTA; Protein TRANSPARENT TESTA 1
STRING	EMT12137	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-108	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]