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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT10411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARR-B | ||||||||
Protein Properties | Length: 751aa MW: 81490.8 Da PI: 7.1214 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.8 | 2.5e-28 | 270 | 323 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl EMT10411 270 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 323 79*******************.********************************8 PP | |||||||
2 | Response_reg | 59.1 | 2.4e-20 | 102 | 194 | 18 | 109 |
HHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 18 lekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 l + + +++++++++ al++l+e++ +D+i+ D+ mp+m+G++ll+ e++lp+i+++a + +++ + +k Ga d+l Kp+ +eel + EMT10411 102 LARVAIGQATTCSQATRALAMLRENRgaFDVIISDVHMPDMNGFRLLELVGL-EMDLPVIMMSADSRTDLVMKGIKHGACDYLIKPVRMEELKN 194 4477777899*************99999*******************87754.558***********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 3.9E-4 | 16 | 43 | No hit | No description |
SMART | SM00448 | 4.0E-16 | 82 | 196 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 31.701 | 83 | 200 | IPR001789 | Signal transduction response regulator, receiver domain |
PIRSF | PIRSF036392 | 1.7E-158 | 101 | 736 | IPR017053 | Response regulator B-type, plant |
Pfam | PF00072 | 6.5E-17 | 102 | 194 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.65E-20 | 109 | 199 | No hit | No description |
Gene3D | G3DSA:3.40.50.2300 | 3.8E-30 | 109 | 226 | No hit | No description |
SuperFamily | SSF52172 | 5.55E-25 | 110 | 204 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS51294 | 11.948 | 267 | 326 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-29 | 267 | 328 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-19 | 268 | 327 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-25 | 270 | 323 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.7E-7 | 272 | 321 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 751 aa Download sequence Send to blast |
MAPPEEAGGG DQFPVGMKVL VVDDDQTCLA VLKRMLVQCR YDVWFYLGTL NDFNAYPFQS 60 WHHFKSRFSI LGGLTRGTTI CLLVLQSDKH PWRLDTWHHH LLARVAIGQA TTCSQATRAL 120 AMLRENRGAF DVIISDVHMP DMNGFRLLEL VGLEMDLPVI MMSADSRTDL VMKGIKHGAC 180 DYLIKPVRME ELKNIWQHVV RKKFGGNKEH EHSGSLDDTD RNRLTNNDNE YASSANDGAE 240 DSWKSQKKKR DKEEDDSELE SGDPSNNSKK PRVVWSVELH QQFVNAVNHL GIDKAVPKKI 300 LELMNVPGLT RENVASHLQK FRLYLKRIAQ HHAGMANPYG VPASSAQVAS LGGLDFQALA 360 ASGQIPPQAL AALQDELLGR PTNSLVLPGR DQSSLRLAAV KGNKPHGEQI AFGQPIYKVQ 420 NNSYAALPQN NPAAGRMPSF SAWPNNKLGM SDSMSALGNV NNSQNSNMVL HELQQQPDTM 480 LSGTLHTLDV KPSGIVMPSQ SLNTFPASEG LSANQNSLII PSQSSGFLTG IPPSMKPELV 540 LPTSQSSNSL LGGIDLINQA STSQPFISSH GGNLPGLMNR NSNVMPSQGI SSFQTGNTPY 600 LVNQNSMGMG SKPPGVLKTE STDSLNQNYA YANHMDSGLL SSQSKNAQFG FLQSPNDVTG 660 GWSSLQNMDG YRNTVGPSQP VSSSSSFQSS NAALGKLPDQ GRGKNLGFVG KGACIPNRFA 720 VDEIESPTNS LSHSIGSSGD IQDMFGFSGQ M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-23 | 269 | 329 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951927 | 0.0 | JF951927.1 Triticum aestivum clone TaMYB44 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558456.1 | 0.0 | two-component response regulator ORR21 | ||||
Swissprot | Q8H7S7 | 0.0 | ORR21_ORYSJ; Two-component response regulator ORR21 | ||||
TrEMBL | M8B8T7 | 0.0 | M8B8T7_AEGTA; Two-component response regulator ARR2 | ||||
STRING | EMT10411 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5796 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-90 | response regulator 2 |
Publications ? help Back to Top | |||
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