PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT04023

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB_related

Protein Properties

Length: 1194aa MW: 132257 Da PI: 9.3462

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT04023	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	67	102	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e+++ a +++G++ W+++a + Rt ++ EMT04023 67 QWSKDELERFYAAYRKYGKD-WRKVAGAVH-DRTSDMV 102 6***************99.****999.9997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-9	59	111	IPR009057	Homeodomain-like
Pfam	PF00249	5.3E-6	67	106	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-5	67	106	IPR009057	Homeodomain-like
CDD	cd00167	4.02E-4	68	102	No hit	No description
SMART	SM01135	6.4E-58	714	815	IPR033471	DIRP domain
Pfam	PF06584	1.3E-33	714	814	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1194 aa Download sequence Send to blast
MSSTRKVRNV NKRYAKINED WPEKDATVVH KNKVRITVGY IISITLLTID QRNIYLQKKK 60 LSDLGSQWSK DELERFYAAY RKYGKDWRKV AGAVHDRTSD MVEALYNMNR AYLSLPEGTA 120 TAAGLIAMMT DHYNILDGSN SDHESNGSPK TSRKPQKRGR AKLQSVSKAS DTRYPDLLQS 180 QPASSSYGCL SLLKKKRSGA SVSLAGGEVS SNNGAPFTFL EQRKTGLRSE TCLDLFVGNK 240 PRAVGKRTPR VPVASMYQRD DKIGPSNRQA KPDANNGDDE GALAALALAE VCQRGSPQVS 300 QTSGRSSGQM FLSPGKSIDR KNADSEMGSS KMHGFQVEAD YPEGSLGSRE AETGDYPKDA 360 SYFLNNEGSV SGKSKPKVKR SQKRRKKAAH KTEDQFEDDR EACSGTEEGC SSRKAKDISD 420 LDVFGSKGSW PSNKSNKRSR QLFFGDELSA LDALHTLADI SVNILQPSSI AESESSAQFK 480 DGSKDNESDD KPSVPAAVSL FDKKDKPRKT KKIKRQSEIA GNEVVTRKKA RLSKDHHHDG 540 STSEVKQDDC KCGVKMEKKK RKSSILKISK DEKNTLKDSE KTEASAEEGK VSSNKGRHTH 600 VSPVSKQNKS KAQESSPAHA DLGKEAMDTV DTTENAITQQ SDSASKSKSR RKLGILKALA 660 PESKPAEGAD DSCDNVSYPV NNINLLINAI ICKDKLSHCL SSRFLRRWCM SEWFYSAIDY 720 PWFAKSEFVE YLNHVKLGHV PRLTRVEWGV IRSSLGKPRR LSKQFLQEER EKLSQYRESV 780 RQHYAELQSG VREGLPTDLA RPLAVGQRVI ACHPKTRELH DGSVLTVDRN RCRVQFDRPE 840 LGVEFVMVAV TDPNKVLVDE IVTLQDIDCM PLHPLENFPE SLRRQNIVNK YYSSFSEVKF 900 EDRSKEYGGG GAPRFIPNEA LLVELRHMNE EVSGKQKDGE IIRDLEHFRK QYAMVLVQLR 960 DSNDHVASAL LCLRQRNTFH GQPTQSYPNK STENGGAFNR TPDPSSNLFG YINQESGSQV 1020 MEIIETSRSK AKTMVDVAVQ AMCKVSEGEN AFAKIGEALD NLNLRGTGSG SSILGIRRIP 1080 PDSGQANSDN SASGRFDPAA ATNNISSPRV LPNGSDSEAQ FPSELISSCV ATILMIQNCT 1140 EKQYHPAEVA HILDSALSRL QPCSSQNVPI FREIEMCMGI IKNQMLALIP TPSG

Sequence ? help Back to Top

Protein Sequence Length: 1194 aa Download sequence Send to blast

MSSTRKVRNV NKRYAKINED WPEKDATVVH KNKVRITVGY IISITLLTID QRNIYLQKKK  60
LSDLGSQWSK DELERFYAAY RKYGKDWRKV AGAVHDRTSD MVEALYNMNR AYLSLPEGTA  120
TAAGLIAMMT DHYNILDGSN SDHESNGSPK TSRKPQKRGR AKLQSVSKAS DTRYPDLLQS  180
QPASSSYGCL SLLKKKRSGA SVSLAGGEVS SNNGAPFTFL EQRKTGLRSE TCLDLFVGNK  240
PRAVGKRTPR VPVASMYQRD DKIGPSNRQA KPDANNGDDE GALAALALAE VCQRGSPQVS  300
QTSGRSSGQM FLSPGKSIDR KNADSEMGSS KMHGFQVEAD YPEGSLGSRE AETGDYPKDA  360
SYFLNNEGSV SGKSKPKVKR SQKRRKKAAH KTEDQFEDDR EACSGTEEGC SSRKAKDISD  420
LDVFGSKGSW PSNKSNKRSR QLFFGDELSA LDALHTLADI SVNILQPSSI AESESSAQFK  480
DGSKDNESDD KPSVPAAVSL FDKKDKPRKT KKIKRQSEIA GNEVVTRKKA RLSKDHHHDG  540
STSEVKQDDC KCGVKMEKKK RKSSILKISK DEKNTLKDSE KTEASAEEGK VSSNKGRHTH  600
VSPVSKQNKS KAQESSPAHA DLGKEAMDTV DTTENAITQQ SDSASKSKSR RKLGILKALA  660
PESKPAEGAD DSCDNVSYPV NNINLLINAI ICKDKLSHCL SSRFLRRWCM SEWFYSAIDY  720
PWFAKSEFVE YLNHVKLGHV PRLTRVEWGV IRSSLGKPRR LSKQFLQEER EKLSQYRESV  780
RQHYAELQSG VREGLPTDLA RPLAVGQRVI ACHPKTRELH DGSVLTVDRN RCRVQFDRPE  840
LGVEFVMVAV TDPNKVLVDE IVTLQDIDCM PLHPLENFPE SLRRQNIVNK YYSSFSEVKF  900
EDRSKEYGGG GAPRFIPNEA LLVELRHMNE EVSGKQKDGE IIRDLEHFRK QYAMVLVQLR  960
DSNDHVASAL LCLRQRNTFH GQPTQSYPNK STENGGAFNR TPDPSSNLFG YINQESGSQV  1020
MEIIETSRSK AKTMVDVAVQ AMCKVSEGEN AFAKIGEALD NLNLRGTGSG SSILGIRRIP  1080
PDSGQANSDN SASGRFDPAA ATNNISSPRV LPNGSDSEAQ FPSELISSCV ATILMIQNCT  1140
EKQYHPAEVA HILDSALSRL QPCSSQNVPI FREIEMCMGI IKNQMLALIP TPSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	374	386	KPKVKRSQKRRKK
2	377	383	VKRSQKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365864	0.0	AK365864.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2038G06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020183561.1	0.0	protein ALWAYS EARLY 2-like isoform X1
TrEMBL	M8BB98	0.0	M8BB98_AEGTA; Uncharacterized protein
STRING	EMT04023	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6230	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-126	DNA binding