PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT03037
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 434aa    MW: 47143.9 Da    PI: 6.7823
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT03037genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.7e-12235279554
               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               h + Er+RR+++N++f+ L+++lP+       K +K +iL  A eY++sL
  EMT03037 235 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILITAREYVNSL 279
               8899********************95.....4999************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.922230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15231300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-12232283No hitNo description
Gene3DG3DSA:4.10.280.105.5E-16234299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-10235279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDSSSWIHGY GTNGGAAAGN SGFMCGYAAR CVHYASYLDR FRFNAYRYPS SYQMMISMQM  60
SMEDEPGAYI VPAVGMQQSV LDEVDFLPSH HAGGCSFPSS SSTCSFRSAS LSCSPENSSA  120
HALTTPAAGL HFPEVSSHLP PVVLPCDDDY HQYVLNFHDT AAMEPSVVPA SAFSRYARQL  180
GARRRPKPAC GQKMFKKSMS VLVKMQTAMR YSHQQHHFQQ ASAEAELSSV NQLQHMISER  240
KRREKLNDSF QALKTVLPPG SKKDKTSILI TAREYVNSLK SKVCDLEEKN KALQAQLAEC  300
ARAAGVEEDD AEKVEIQITR AAADREDGTT TSEVCTVKIA ARPAHGNTMD VVLRTLQCLN  360
DQMGEDDVSL VAMSTSDGDG GNGLTGAFLT MQLKSASGAK WEEEAVREAV AKAVAARTGA  420
DRRGDAAGRS WHAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243ERKRRE
2239244RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679260.0AK367926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065A01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164742.10.0putative transcription factor bHLH041 isoform X1
TrEMBLR7W4L30.0R7W4L3_AEGTA; Putative transcription factor bHLH041
STRINGEMT030370.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-25bHLH family protein