PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026876.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 209aa    MW: 21175.8 Da    PI: 7.903
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026876.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-2062111356
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+G+r+++ +grW+AeIrdp++    +r++lg++ t+e+Aa+a++ a+++++g+
  Do026876.1  62 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDVAAREIRGA 111
                 9*******.**********954...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.7961118IPR001471AP2/ERF domain
PfamPF008478.0E-1461110IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2261119IPR016177DNA-binding domain
SMARTSM003801.1E-3461124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3161118IPR001471AP2/ERF domain
CDDcd000186.78E-2862117No hitNo description
PRINTSPR003671.8E-106273IPR001471AP2/ERF domain
PRINTSPR003671.8E-1084100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MCGGAIIADF LPAGARRPAI SSSADDTVSA SILSSGTTAF LGCDEELQAA ARLPAPGRKT  60
AYRGIRRRPW GRWAAEIRDP RKGARVWLGT YATPEDAARA YDVAAREIRG AKAKLNFPPA  120
VGAGAGAPAA KKRRKVPAAT EESSGSSSPA TTVVGAAAAA ADGGGGGAAT LRDCMSGLEA  180
FLGLEDADAA EEAWDAVDLM FAGSCPPSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-21621271581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130134KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026876.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560725e-84EU956072.1 Zea mays clone 1556883 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962330.12e-83ethylene-responsive transcription factor ERF071
TrEMBLA0A1E5V0E61e-141A0A1E5V0E6_9POAL; Ethylene-responsive transcription factor RAP2-3
STRINGSi023329m6e-83(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.17e-34ethylene-responsive element binding protein