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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Do026842.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family |
AP2 |
Protein Properties |
Length: 514aa MW: 55996.4 Da PI: 7.9533 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do026842.1 | genome | Dichan | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 110 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+++G+r+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a++ +++l+g
Do026842.1 110 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFDTAEAAARAYDIEARRLRG 159
69*******.**********72....35*************************98 PP
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2 | AP2 | 56.6 | 6.5e-18 | 345 | 395 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
++y+GVr+++ +grW+AeIrdp+ + +r++lg++ taeeAa+a+++ +++++g
Do026842.1 345 KKYRGVRYRR-SGRWAAEIRDPR----QgRRVWLGTYCTAEEAARAYDREARRIRG 395
59******99.7*********94....25************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 514 aa
Download sequence Send
to blast |
MCGGAILAEL IPSPRRAASA SKPVTAGHLC PAGSTSNSNS NSKKASSGRN MRRNHADIDD 60 FEAAFEEFDD DFDEEVEEDH RFMFSSKSSA FSPAHGGRLA ASQKKRGRRH FRGIRQRPWG 120 KWAAEIRDPH KGTRVWLGTF DTAEAAARAY DIEARRLRGS KAKVNFPAAG ARPRRGNPRT 180 APKPQHPAAV QPALLGVGGE KHQEEMAVKP ELTASFDLGS FFDMTFPPFP AAAPAMESSF 240 TGSTTESESG SPAKKPRYDD SSDGVSGGGG STLELADELA FDPFMLPYSG GYESLDGLFA 300 VEDVNGVNND MNSVGLWSFD EFPPDISGAA VSTTPAPRVA AAGAKKYRGV RYRRSGRWAA 360 EIRDPRQGRR VWLGTYCTAE EAARAYDREA RRIRGKSARL NFPPQHGGPC RQRRRAPVGI 420 DLNLPAVSDD LDGTGGDDTM DVDEDAVQST LARIKDLITQ DPHDERIVSR AAGALPYAAL 480 IAECSRQMEE IAALRRDLET RERQLVRLVS HVLR
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT039300 | 3e-78 | BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds. |
GenBank | EU970244 | 3e-78 | EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds. |
GenBank | KJ726938 | 3e-78 | KJ726938.1 Zea mays clone pUT3484 AP2-EREBP transcription factor (EREB180) mRNA, partial cds. |