PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025086.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 164aa    MW: 17342.1 Da    PI: 4.8859
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025086.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.21.8e-123478251
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                 y+GVrw+   g++ AeIrdp +   + r +lg++ taeeAa a++ a++
  Do025086.1 34 SYRGVRWHF--GKYGAEIRDPLD---SERAWLGSYATAEEAAYAYDIAAR 78
                69******9..*********955...5*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-53477IPR001471AP2/ERF domain
PROSITE profilePS5103216.5293490IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-213491IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-163490IPR016177DNA-binding domain
SMARTSM003801.0E-193496IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MADAGAFFQL VKQAAAAAKA KREAAGLSPL QEKSYRGVRW HFGKYGAEIR DPLDSERAWL  60
GSYATAEEAA YAYDIAARVV QGKRARPNFP EPPPGLGEED GPTADVVIKF FAELRNSRVV  120
RAHKRARTTA AESSAAAAAM GPCAAGANNS DADADADADA DDDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025086.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811436.12e-36ethylene-responsive transcription factor ERF055-like
TrEMBLA0A1E5VB041e-112A0A1E5VB04_9POAL; Uncharacterized protein
STRINGPavir.Db00700.1.p6e-30(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2289355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.18e-08DORNROSCHEN-like