PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do023331.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

MYB_related

Protein Properties

Length: 1186aa MW: 132049 Da PI: 9.785

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do023331.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	6.9e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++ a +++G++ W++Ia + Rt ++ Do023331.1 46 QWSKEELERFYGAYRKYGKD-WRKIAGAIR-DRTSDMV 81 6***************99.******9.9998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-10	41	92	IPR009057	Homeodomain-like
SMART	SM00717	0.0019	43	91	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.051	45	86	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.5E-5	46	85	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-6	46	86	IPR001005	SANT/Myb domain
CDD	cd00167	3.99E-5	47	89	No hit	No description
SMART	SM01135	1.1E-56	685	786	IPR033471	DIRP domain
Pfam	PF06584	4.7E-33	685	785	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1186 aa Download sequence Send to blast
MASARKVRNW NKRYAKINED WQDKDTTSVP KSKVRKKKLS DMLGSQWSKE ELERFYGAYR 60 KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS 120 DRESNDSPKT SRKPQKRGRA KFQSVSKTSD TRYPDQVQSQ PASSSYGCLS LLKKKRSGGN 180 RPRAVGKRTP RVPVASMYHR DERGAPNRQA KPDSNNGDDE GAHVAALALA EVYQRGGSPQ 240 VSQTPGRSGD RMFLSPIKSS DRKIPVWHFQ NADSEMGSSK LHGFQLDADY PEASLGSGEA 300 ETGDYTKGAS YLMTNKGSPF GKPQKKVKRT QKRRKKAARK TGDQFEDDRE ACSGTEEGHS 360 TRKAKDEPEL ETLGRKTAWP SSTSNKRSRQ LFFDVVRITC WVLSCIPSIQ CKPSIHRSFA 420 DESSALDALH TLADLSVNIL QPSSVVESES SAQIKDENKD NDSDGKPGML ASVSVYEQKN 480 NSKSAAKKLK RQSEIASTDM VTRKKAKLAK DPHHDGSTTS EVKQQACTCG VKTEKKKRKP 540 STGKVLSKLL FVKHFCKQQF LLKKGRHLLI KVGIHISPIS KQNKFKAQGC SLAPTDFGKV 600 VMDIAETTTQ GATTPQADLT SMVKSRRKLG IQKSLNQECK PTEGAGDSGS DKLSYSLSNI 660 IDVKDKFSHC LSSRLLRRWS MFEWFYSAID YPWFAKSEFV EYLNHVKLGH VPRLTRVEWG 720 VIRSSLGKPR RLSKQFLREE REKLSQYRDS VRQHYAELRS GVREGLPTDL ARPLAVGQRV 780 IACHPRTREL HDGNVLTVDH NRCRVQFDRP ELGVEFVMDI DCMPLHPPEN FPESLRQQNI 840 VNEYYSRLSE ANEDQMKELG SGGAARFTSN LNGADATFHI PSGHPISTLM KQAQGDSIDS 900 IAQAKATVNE EALLVELRHM NEEVSGKQKD GEIIRDLEHF RKQYAMVLVQ LRDSNDQVAA 960 ALLSLRQRNT YHGNPVQSFP KSMENGIAFA GAPDAYNLFG YINPESGSQV IEVIETSKCR 1020 AKMMVNVAIQ VCWRELFAMC KVSEGENAFA KIGEALDNLN SRGTGSGSSI LGIRRIPPDS 1080 GQSNASYQDN GTPAPTTNNS SRLPNGCDSD GQFPTELISS CVAMMLMIKN CTEKQYHPAE 1140 VAHILDSALS RLQPCSSQNI PIFREIEMCM GIIKNQMLAL IPTPSG

Sequence ? help Back to Top

Protein Sequence Length: 1186 aa Download sequence Send to blast

MASARKVRNW NKRYAKINED WQDKDTTSVP KSKVRKKKLS DMLGSQWSKE ELERFYGAYR  60
KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS  120
DRESNDSPKT SRKPQKRGRA KFQSVSKTSD TRYPDQVQSQ PASSSYGCLS LLKKKRSGGN  180
RPRAVGKRTP RVPVASMYHR DERGAPNRQA KPDSNNGDDE GAHVAALALA EVYQRGGSPQ  240
VSQTPGRSGD RMFLSPIKSS DRKIPVWHFQ NADSEMGSSK LHGFQLDADY PEASLGSGEA  300
ETGDYTKGAS YLMTNKGSPF GKPQKKVKRT QKRRKKAARK TGDQFEDDRE ACSGTEEGHS  360
TRKAKDEPEL ETLGRKTAWP SSTSNKRSRQ LFFDVVRITC WVLSCIPSIQ CKPSIHRSFA  420
DESSALDALH TLADLSVNIL QPSSVVESES SAQIKDENKD NDSDGKPGML ASVSVYEQKN  480
NSKSAAKKLK RQSEIASTDM VTRKKAKLAK DPHHDGSTTS EVKQQACTCG VKTEKKKRKP  540
STGKVLSKLL FVKHFCKQQF LLKKGRHLLI KVGIHISPIS KQNKFKAQGC SLAPTDFGKV  600
VMDIAETTTQ GATTPQADLT SMVKSRRKLG IQKSLNQECK PTEGAGDSGS DKLSYSLSNI  660
IDVKDKFSHC LSSRLLRRWS MFEWFYSAID YPWFAKSEFV EYLNHVKLGH VPRLTRVEWG  720
VIRSSLGKPR RLSKQFLREE REKLSQYRDS VRQHYAELRS GVREGLPTDL ARPLAVGQRV  780
IACHPRTREL HDGNVLTVDH NRCRVQFDRP ELGVEFVMDI DCMPLHPPEN FPESLRQQNI  840
VNEYYSRLSE ANEDQMKELG SGGAARFTSN LNGADATFHI PSGHPISTLM KQAQGDSIDS  900
IAQAKATVNE EALLVELRHM NEEVSGKQKD GEIIRDLEHF RKQYAMVLVQ LRDSNDQVAA  960
ALLSLRQRNT YHGNPVQSFP KSMENGIAFA GAPDAYNLFG YINPESGSQV IEVIETSKCR  1020
AKMMVNVAIQ VCWRELFAMC KVSEGENAFA KIGEALDNLN SRGTGSGSSI LGIRRIPPDS  1080
GQSNASYQDN GTPAPTTNNS SRLPNGCDSD GQFPTELISS CVAMMLMIKN CTEKQYHPAE  1140
VAHILDSALS RLQPCSSQNI PIFREIEMCM GIIKNQMLAL IPTPSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	323	339	QKKVKRTQKRRKKAARK
2	326	332	VKRTQKR
3	534	539	KKKRKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do023331.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820688.1	0.0	protein ALWAYS EARLY 2-like
TrEMBL	A0A1E5VC56	0.0	A0A1E5VC56_9POAL; Protein ALWAYS EARLY 3
STRING	Si025839m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6230	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-150	DNA binding